NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS53151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53151.1 Public Mus musculus X Snx12 23 108 98 CCDS HistoryNCBI Gene:55988Re-query CCDS DB by CCDS ID:53151.1Re-query CCDS DB by GeneID:55988See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120389.7 ENSMUSP00000113117.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120389.7Link to Ensembl Protein Viewer:ENSMUSP00000113117.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120389Re-query CCDS DB by Protein ID:ENSMUSP00000113117
Original member NCBI NM_001110310.1 NP_001103780.1 Updated not alive Link to Nucleotide Sequence:NM_001110310.1Link to Protein Sequence:NP_001103780.1Re-query CCDS DB by Nucleotide ID:NM_001110310Re-query CCDS DB by Protein ID:NP_001103780
Current member NCBI NM_001110310.2 NP_001103780.1 Accepted alive Link to Nucleotide Sequence:NM_001110310.2Link to Protein Sequence:NP_001103780.1Re-query CCDS DB by Nucleotide ID:NM_001110310Re-query CCDS DB by Protein ID:NP_001103780Link to BLAST:NP_001103780.1

Chromosomal Locations for CCDS 53151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101213762 101213864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101214401 101214525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101215483 101215578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101222262 101222426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGTCGGACACCGCAGTGGCTGACACTAGGCGCCTTAACTCGAAGCCCCAAGACCTGACCGACGCTTACG
GGCCGCCCAGTAACTTCCTGGAGATAGACATCTTTAATCCACAGACGGTGGGCGTGGGCCGCGCGCGCTT
CACCACCTATGAGGTTCGCATGCGGACAAACCTACCCATCTTCAAGCTGAAAGAATCCTGTGTACGGCGA
CGCTATAGTGACTTTGAGTGGCTGAAAAATGAGCTGGAGCGAGATAGTAAGATCGTAGTACCACCACTGC
CTGGGAAAGCCTTGAAGCGGCAGCTCCCTTTCCGAGGAGATGAAGGGATCTTTGAGGAGTCTTTCATTGA
AGAAAGGAGGCAAGGCCTCGAACAGTTTATTAACAAAATTGCTGGGCACCCACTGGCTCAGAATGAACGC
TGTCTACACATGTTCCTGCAGGAGGAGGCAATTGATAGGAACTACGTCCCTGGGAAGGTGCGCCAGTAG

Translation (162 aa):
MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRR
RYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNER
CLHMFLQEEAIDRNYVPGKVRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH