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Report for CCDS52793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52793.1 Public Mus musculus 9 Rdx 23 108 98 CCDS HistoryNCBI Gene:19684Re-query CCDS DB by CCDS ID:52793.1Re-query CCDS DB by GeneID:19684See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52793.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061352.10 ENSMUSP00000055303.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061352.10Link to Ensembl Protein Viewer:ENSMUSP00000055303.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000061352Re-query CCDS DB by Protein ID:ENSMUSP00000055303
Original member Current member NCBI NM_001104617.1 NP_001098087.1 Accepted alive Link to Nucleotide Sequence:NM_001104617.1Link to Protein Sequence:NP_001098087.1Re-query CCDS DB by Nucleotide ID:NM_001104617Re-query CCDS DB by Protein ID:NP_001098087Link to BLAST:NP_001098087.1

Chromosomal Locations for CCDS 52793.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 52060892 52060903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52063578 52063661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52064860 52064955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52065645 52065919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52067361 52067444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52068130 52068276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52068807 52068903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52069615 52069778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52073154 52073284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52074985 52075064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGCCGAAGCCAATCAATGTAAGAGTAACTACAATGGACGCTGAGCTAGAATTTGCCATCCAGCCCAATA
CAACTGGCAAACAACTTTTTGACCAGGTTGTAAAAACAGTTGGCTTACGTGAGGTCTGGTTTTTTGGGCT
GCAATATGTAGACAGCAAAGGATATTCTACATGGCTTAAATTGAATAAAAAGGTAACACAGCAAGATGTT
AAAAAAGAAAATCCTTTACAGTTCAAGTTTAGAGCTAAATTCTTTCCTGAAGATGTTTCTGAGGAATTGA
TTCAAGAAATAACACAGAGACTTTTCTTCTTGCAAGTTAAAGAAGCCATCTTAAATGATGAGATATATTG
CCCACCAGAAACTGCAGTTCTTTTGGCTTCGTATGCTGTCCAAGCCAAGTATGGAGATTATAATAAAGAG
ATTCACAAACCAGGCTATCTGGCTAATGACAGACTCTTACCACAGCGTGTTTTGGAACAACACAAACTGA
CCAAAGAGCAGTGGGAGGAGAGAATACAGAACTGGCATGAGGAACACAGAGGGATGCTAAGGGAAGATTC
GATGATGGAATACTTGAAGATTGCGCAAGATCTAGAGATGTATGGTGTCAACTACTTTGAAATCAAGAAT
AAGAAGGGTACTGAGCTGTGGCTAGGTGTTGATGCTTTAGGCCTGAATATTTATGAACATGATGACAAGT
TAACACCTAAAATTGGTTTTCCCTGGAGTGAAATCAGAAATATTTCATTTAATGACAAAAAATTCGTTAT
AAAGCCAATTGACAAAAAGGCACCTGATTTTGTCTTCTATGCACCTCGTCTGAGAATCAATAAACGAATT
TTGGCCTTATGTATGGGAAACCATGAACTGTACATGCGAAGGAGAAAGCCTGATACTATTGAAGTACAGC
AGATGAAGGCTCAGGCCCGGGAGGAAAAGCATCAGAAGCAGCTAGAAAGGGCACAATTAGAGAATGAAAA
GAAGAAACGAGAAATAGCAGAAAAGGAAAAGGAAAGAATAGAACGTGAAAAGGAAGAGCTGATGGAGCGT
CTGAGGCAGATCGAAGAGCAAACAGTGAAAGCCCAGAAAGGATGTATAATAAAAGTATTAATGGTTTATA
TACAAAACTCTGAAAGAAGCACTGAAGAGTATAAGGCAGATAGAGCATAA

Translation (389 aa):
MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDV
KKENPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKE
IHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKN
KKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRI
LALCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQLERAQLENEKKKREIAEKEKERIEREKEELMER
LRQIEEQTVKAQKGCIIKVLMVYIQNSERSTEEYKADRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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