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Report for CCDS52696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52696.1 Public Mus musculus 8 Cbfa2t3 23 108 98 CCDS HistoryNCBI Gene:12398Re-query CCDS DB by CCDS ID:52696.1Re-query CCDS DB by GeneID:12398See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006525.13 ENSMUSP00000006525.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006525.13Link to Ensembl Protein Viewer:ENSMUSP00000006525.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000006525Re-query CCDS DB by Protein ID:ENSMUSP00000006525
Original member Current member NCBI NM_177289.1 NP_796263.1 Accepted alive Link to Nucleotide Sequence:NM_177289.1Link to Protein Sequence:NP_796263.1Re-query CCDS DB by Nucleotide ID:NM_177289Re-query CCDS DB by Protein ID:NP_796263Link to BLAST:NP_796263.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796263.1 559 O54972-2 559 100% 0 0

Chromosomal Locations for CCDS 52696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122630707 122630976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122633318 122633508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122634360 122634428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122634949 122635147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122635754 122635839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122637994 122638223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122638857 122639038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122642964 122643053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122643292 122643533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122650330 122650450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGCCAGACTCCCCGGCTGAAGTGAAGACGCAGCCCCGGTCCACACCCCCCAGCATGCCGCCCCCACCTC
CCACCTCATCCCAGGGAGCCACACGACCACCCTCCTTCACACCTCACACACTGATGAACGGCAGCAGCCA
CTCACCCACGGCCATCCACGGTGCCCCATCTACACCCAATGGCTTCAGCAACGGCCCAGCCACCTCATCC
ACGGCCTCGCTCTCCACACAGCACCTGCCCCCGGCGTGCGGGGCACGGCAGCTCAGCAAGCTTAAGCGTT
TCCTCACCACCCTACAGCAGTTTGGCAGTGACATCTCACCTGAGATCGGGGAGCGCGTGCGCACACTGGT
GCTGGGCCTGGTGAACTCAACTCTGACGATCGAAGAGTTTCATGCCAAGCTCCAGGAAGCCACCAACTTT
CCACTGAGGCCGTTTGTTATCCCTTTTCTGAAGGCTAATCTTCCACTGCTGCAGCGTGAGCTCCTGCACT
GTGCCCGCCTGGCCAAACAGACACCTGCCCAGTACCTGGCCCAGCACGAACAGCTGCTGCTGGACGCCAG
CGCCACCTCCCCTGTCGACTCGTCTGAGCTCCTGCTGGAAGTCAACGAGAACGGCAAAAGGAGAACACCT
GACAGGACCAAAGAGAATGGATCAGACCGGGACCCTCTGCACCCCGACCACCTCAGTAAGCGGTCCTGCA
CCCTGAGCCCCGCCCAGCGCTGCAGCCCCAGCAATGGGCTGCCCCACCCGACGCCACCCCCACCCCCGCA
CTATCGCCTGGAGGACATGGCCATGGCCCACCATTTCCGGGACTCCTACCGCCATCCTGATCCCCGAGAG
CTACGGGAACGCCACCGGCCCCTGGCCATACCTGGGTCTCGACAAGAAGAAGTGATTGATCACAGGCTCA
CAGAACGCGAGTGGGCAGAAGAATGGAAGCACCTCAACAGTCTTCTGAACTGCATCATGGACATGGTGGA
GAAGACCCGGCGATCCCTCACCGTCCTGCGCCGGTGTCAGGAGGCCGACCGTGAGGAACTCAACCACTGG
ATCCGGTGCTACAGTGACTCTGAGGAGGGGAAGAAGGGCCCTACCCCCATCTCTGCCCGGTCCCTCAACA
GCTGCAGTGGCCCTGAGGGGTCTCAGCTAGATGTTCACCGGGACTTCACGCCCAGGACCCTGTCTGGCTA
CATGCCTGAAGAGATCTGGAGGAAGGCTGAAGAAGCTGTGAATGAGGTGAAGCGCCAGGCCATGTCAGAA
CTACAGAAAGCTGTGTCTGATGCGGAGCGCAAAGCCCATGAACTCATCACCACAGAGCGTGCCAAGATGG
AACGAGCCCTGGCGGAGGCCAAGCGACAGGCCTCGGAGGATGCCCTGACTGTCATCAACCAGCAAGAGGA
CTCCAGCGAGAGCTGCTGGAACTGCGGGCGCAAGGCCAGCGAGACGTGCAGTGGCTGTAACGCCGCCCGC
TACTGCGGGTCCTTCTGTCAGCACAAAGACTGGGAGAAACACCATCACGTGTGCGGCCAGAGTCTGCAGG
GCCCCGCGGCTGCAGTGGCTGACCCACTACCTGGACAGCCTGACGCCACTGCCAGCCCCAGCGAAGCCGG
CTCGGCAGGGCCCTCTCGTCCCTGCTCTCCGGGGCCGCCAGGCCCGCTGGACGCTGCTGTGCCCCGCTGA

Translation (559 aa):
MPDSPAEVKTQPRSTPPSMPPPPPTSSQGATRPPSFTPHTLMNGSSHSPTAIHGAPSTPNGFSNGPATSS
TASLSTQHLPPACGARQLSKLKRFLTTLQQFGSDISPEIGERVRTLVLGLVNSTLTIEEFHAKLQEATNF
PLRPFVIPFLKANLPLLQRELLHCARLAKQTPAQYLAQHEQLLLDASATSPVDSSELLLEVNENGKRRTP
DRTKENGSDRDPLHPDHLSKRSCTLSPAQRCSPSNGLPHPTPPPPPHYRLEDMAMAHHFRDSYRHPDPRE
LRERHRPLAIPGSRQEEVIDHRLTEREWAEEWKHLNSLLNCIMDMVEKTRRSLTVLRRCQEADREELNHW
IRCYSDSEEGKKGPTPISARSLNSCSGPEGSQLDVHRDFTPRTLSGYMPEEIWRKAEEAVNEVKRQAMSE
LQKAVSDAERKAHELITTERAKMERALAEAKRQASEDALTVINQQEDSSESCWNCGRKASETCSGCNAAR
YCGSFCQHKDWEKHHHVCGQSLQGPAAAVADPLPGQPDATASPSEAGSAGPSRPCSPGPPGPLDAAVPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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