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Report for CCDS52559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52559.1 Public Mus musculus 8 Tmem192 23 108 98 CCDS HistoryNCBI Gene:73067Re-query CCDS DB by CCDS ID:52559.1Re-query CCDS DB by GeneID:73067See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52559.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079896.8 ENSMUSP00000078819.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079896.8Link to Ensembl Protein Viewer:ENSMUSP00000078819.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000079896Re-query CCDS DB by Protein ID:ENSMUSP00000078819
Original member Current member NCBI NM_001163747.1 NP_001157219.1 Accepted alive Link to Nucleotide Sequence:NM_001163747.1Link to Protein Sequence:NP_001157219.1Re-query CCDS DB by Nucleotide ID:NM_001163747Re-query CCDS DB by Protein ID:NP_001157219Link to BLAST:NP_001157219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157219.1 221 Q9CXT7-2 221 100% 0 0

Chromosomal Locations for CCDS 52559.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 64947307 64947333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64956386 64956532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64959345 64959609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64965539 64965641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 64968711 64968834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGCGGCGGCCGGCCGGCTGGAGGACAGTTCCTTGGATATCCTACAAAGTATGGATGACGACCCGCTTC
TGGATACCCAGCCTCTCCCACACCACTCTCTCCAAGCTCAGTTTAGACCCAGATTCCATCCTCTCCCCAC
GGTCATCATAGCGAACCTTCTGTTGCTTATACATGTCGTGTTTGTTGTTTTAGCATTTTTAACGGGTGTG
CCGTGTTTGTATCCTAATCCAACTGAAGACAAGTGCCCAGAAAACTACACCAGCCCGTTGAAGGTTCAGA
CGGCCATAATCCTTGGGAAACTTATCCTGTGGATTCTGCATTTGCTTTTTGAACGCTACGTCCAGTATCA
CCACAGGAAAGTCAGGAGCCGAGGCTATTCCCAGATCTACCGCTCTACGAGGCATCTCAAAACACTGGCC
CTCACCATCCACTCTTCTGTGAAGATTAGGAGGTTCAACAGAGCCAAGCCACTGCCTGATGTACTTGAAG
AAGAGAAAATTTATGCTTACCCCAGCAATACTGCCTCAGAGACTGGCTTCAGGACTGTTTCAAGCCTAGA
AGAAATTGTTGAAAAGCAAGAGGACATAATTGTGTACCTGAAGCGACACAATGCTCTGCTGAGTAAGCGG
TTGTTGGAGCTGGCAACTCAGCCAGCCAGGACTTGA

Translation (221 aa):
MAAAGRLEDSSLDILQSMDDDPLLDTQPLPHHSLQAQFRPRFHPLPTVIIANLLLLIHVVFVVLAFLTGV
PCLYPNPTEDKCPENYTSPLKVQTAIILGKLILWILHLLFERYVQYHHRKVRSRGYSQIYRSTRHLKTLA
LTIHSSVKIRRFNRAKPLPDVLEEEKIYAYPSNTASETGFRTVSSLEEIVEKQEDIIVYLKRHNALLSKR
LLELATQPART


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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