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Report for CCDS52320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52320.1 Public Mus musculus 7 Klhl35 23 108 98 CCDS HistoryNCBI Gene:72184Re-query CCDS DB by CCDS ID:52320.1Re-query CCDS DB by GeneID:72184See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037359.8 ENSMUSP00000041363.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037359.8Link to Ensembl Protein Viewer:ENSMUSP00000041363.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000037359Re-query CCDS DB by Protein ID:ENSMUSP00000041363
Original member Current member NCBI NM_028145.1 NP_082421.1 Accepted alive Link to Nucleotide Sequence:NM_028145.1Link to Protein Sequence:NP_082421.1Re-query CCDS DB by Nucleotide ID:NM_028145Re-query CCDS DB by Protein ID:NP_082421Link to BLAST:NP_082421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082421.1 574 Q9CZ49 574 100% 0 0

Chromosomal Locations for CCDS 52320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99468251 99469104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99470164 99470348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99470957 99471075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99471685 99471873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99472742 99472930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99473707 99473895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGAGGGAGACCCCGGAGCGCGAGGAGGAGCCGGGCACAGAGGCCCCGTGCGCCGCGTCCTGCCACGCGC
AGCGCATCCTGCAGACGCTCAACGCGTACCGCCGGAGCGGCACCCTCACCGACGTGGTGCTGCGCGCCGG
AGGCCGCGACTTCCCGTGCCACCGCGCGGCGCTGAGCGCGGCCAGCGCCCACTTCCGCGGCCTGTTCGCG
GCCGGTCGTCCAGAGCGCGCGGCGGCGGTGGTCCCGGTAGGACCCGAGACGCCGGGGACGGCGGCGGCCC
TGGCCGTGGTGCTCGACTACGTGTACGGCGCGGGCGTGCGGCTGCGCGCCGAGGACGAGGCGGCCGCCGT
GCTGGCGCTGGCCGAGCGGCTGGGCGTGGCCGGGCTGCGGGAGGCCTGCGCGCGCTTCCTCGAGGGCCGC
CTGCGCGCCGCCAACAGTCTGGCGCTGCGACGCGTCGCCGCCGCCTTCTCGCTCGCCTCCCTGGCCGAGC
GCTGCGGCCGCGTGCTGCGCCAGGCCTTCGTGGAGGTGACGCGCCACGCCGACTTCCTGGAGCTCGCGCC
CGACGAGGTGGCGGCGCTGCTGGCCGATCCCGCGCTGCGCGTGGCGCGCGAGGAGGCCGTGTTCGAGGCG
GCCATGCGCTGGGTGCGCCACGACGCGCCGGCTCGCCGCGGGCAGCTGCGTCGCCTCCTGGAGCACGTGC
GCCTGCCGCTGCTGGCGCCCGCCTACTTCCTGGAGAAGGTGGAGGCGGACGAGCTGCTGCAGGCGTGCGG
CGACTGCCGCCCTCTGCTGCTCGAAGCCCGCGCCTGCTTCATCCTGGGCCGGGAAGCGGGCGCGCTGCGG
GCCAGGCCGCGGAGGTTCATGGACTTAGCTGAAGTGATCGTGGTCATTGGCGGGTGTGACCGAAAGGGGC
TCCTGAAGCTGCCTTTTGCGGATGCTTACCACCCAGAAAGTCAGCGCTGGACCCCACTGCCTAGCCTGCC
TGGTTATACACGCTCTGAATTTGCCTCCTGTGCACTTCGAAATGACATTTACGTTTCTGGAGGTCACATC
AACAGCCGTGACGTCTGGATGTTTAGCTCCCATCTGAACACCTGGATCAAGGTTGCCTCAATGCACAAGG
GCAGGTGGAGGCACAAGATGGTGGCCCTGCAGGGACAGCTCTTTGCAGTAGGTGGCTTCGATGGCCTGAG
ACGCCTGCGCAGCGTGGAGCGCTATGACCCGTTCTCCAACACCTGGGCAGCCATAGCGCCCCTGCCGGAG
GCCGTGAGCTCTGCAGCCGTGGCGCCCTGCGCTGGCCAGCTATACGTGATTGGGGGCGCAGGACAGGACG
GTGTCAACACTGACAAGGTGCAGTGCTTTGACCCCAAGGAGGACCAGTGGAGCCTGCGGTCCCCAGCACC
CTTCTTGCAGCGGTGTCTTGAGGCTGTCTCCCTGGAAGACACCATTTATGTGGTGGGAGGCCTCATGAGC
AAAATTTTCACCTATGACCCTGGCTCAGATGTCTGGAGAGAGGCAGCTGACCTGCCCAGCCCTGTGGAGA
GCTGTGGCGTGACGGTGTGTGATGGGAAGGTCCACATCCTTGGTGGGCGGGACGAACACGGGGAGAGCAC
CAGCAGTGTCTTCACCTTTGACCCTGGCACTGGGCAGGTGGAGGCCCAGCCATCCCTGCAGCGCTGCACC
AGCTCTCATGGCTGTGTCACCATCGTGCAGAGCCTGAGCCGATGA

Translation (574 aa):
MRETPEREEEPGTEAPCAASCHAQRILQTLNAYRRSGTLTDVVLRAGGRDFPCHRAALSAASAHFRGLFA
AGRPERAAAVVPVGPETPGTAAALAVVLDYVYGAGVRLRAEDEAAAVLALAERLGVAGLREACARFLEGR
LRAANSLALRRVAAAFSLASLAERCGRVLRQAFVEVTRHADFLELAPDEVAALLADPALRVAREEAVFEA
AMRWVRHDAPARRGQLRRLLEHVRLPLLAPAYFLEKVEADELLQACGDCRPLLLEARACFILGREAGALR
ARPRRFMDLAEVIVVIGGCDRKGLLKLPFADAYHPESQRWTPLPSLPGYTRSEFASCALRNDIYVSGGHI
NSRDVWMFSSHLNTWIKVASMHKGRWRHKMVALQGQLFAVGGFDGLRRLRSVERYDPFSNTWAAIAPLPE
AVSSAAVAPCAGQLYVIGGAGQDGVNTDKVQCFDPKEDQWSLRSPAPFLQRCLEAVSLEDTIYVVGGLMS
KIFTYDPGSDVWREAADLPSPVESCGVTVCDGKVHILGGRDEHGESTSSVFTFDPGTGQVEAQPSLQRCT
SSHGCVTIVQSLSR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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