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Report for CCDS52224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52224.1 Public Mus musculus 7 Cd33 23 108 98 CCDS HistoryNCBI Gene:12489Re-query CCDS DB by CCDS ID:52224.1Re-query CCDS DB by GeneID:12489See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004728.11 ENSMUSP00000004728.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004728.11Link to Ensembl Protein Viewer:ENSMUSP00000004728.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000004728Re-query CCDS DB by Protein ID:ENSMUSP00000004728
Original member Current member NCBI NM_001111058.1 NP_001104528.1 Accepted alive Link to Nucleotide Sequence:NM_001111058.1Link to Protein Sequence:NP_001104528.1Re-query CCDS DB by Nucleotide ID:NM_001111058Re-query CCDS DB by Protein ID:NP_001104528Link to BLAST:NP_001104528.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104528.1 403 Q63994-1 403 100% 0 0

Chromosomal Locations for CCDS 52224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43528738 43529008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43529473 43529555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43529866 43529932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43530212 43530305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43532038 43532316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43532602 43532982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43533058 43533094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGCTGTGGCCACTGCCGCTGTTCTTGCTGTGTGCAGGCTCCCTGGCTCAGGATTTAGAATTCCAGCTGG
TGGCGCCCGAGTCAGTGACAGTCGAGGAGGGCCTATGTGTCCATGTGCCCTGCAGTGTTTTCTACCCCTC
CATTAAGCTCACTTTAGGACCTGTGACCGGCTCCTGGCTCCGGAAAGGGGTCAGTCTCCATGAAGACTCT
CCAGTGGCCACAAGTGACCCCAGACAACTAGTGCAGAAGGCAACACAGGGCAGATTCCAACTCCTTGGGG
ACCCACAGAAACATGACTGTTCCCTGTTCATCAGAGATGCACAGAAAAATGACACAGGAATGTACTTCTT
CAGAGTGGTCAGAGAACCTTTTGTGAGATATTCTTACAAAAAAAGCCAGCTGTCACTGCATGTGACCTCT
CTATCACGGACTCCTGACATTATAATCCCGGGGACCCTGGAGGCTGGCTATCCTAGCAATCTCACCTGCT
CTGTGCCCTGGGCTTGTGAGCAGGGGACACCCCCTACTTTCTCCTGGATGTCAACTGCCCTCACCTCCTT
GAGTTCCCGAACCACAGACTCCTCCGTGCTGACGTTCACACCTCAGCCTCAGGACCATGGTACCAAACTC
ACCTGCTTGGTGACCTTCTCTGGAGCAGGTGTCACTGTGGAAAGGACCATCCAGCTCAATGTTACCCGGA
AATCAGGCCAGATGAGAGAGCTGGTCCTGGTGGCTGTGGGGGAGGCAACGGTCAAGCTCCTGATTCTTGG
GCTCTGTCTCGTGTTTCTCATTGTGATGTTCTGCAGAAGGAAGACAACAAAGCTGTCAGTGCACATGGGC
TGTGAAAATCCTATCAAGAGGCAGGAAGCGATCACATCCTATAATCACTGCCTATCTCCAACTGCATCTG
ATGCTGTGACTCCAGGATGTTCCATACACAGGCTCATCAGCAGGACTCCAAGGTGCACAGCAATCCTGAG
AATCCAAGACCCTTACAGAAGGACTCACCTCAGGAACAGAGCAGTGTCCACACTAAGATTTCCTTGGATT
TCATGGGAGGGAAGCCTCAGGAGTACTCAGAGATCTAAATGCACCAAGCTTTGCTCTCCTGTGAAGAACC
TGTGTCCTCTATGGCTTCCTGTGGATAATTCCTGCATCCCTCTGATCCCAGAGTGGGTTATGCTGCTGTG
TGTGAGTCTTACACTCAGTTGA

Translation (403 aa):
MLWPLPLFLLCAGSLAQDLEFQLVAPESVTVEEGLCVHVPCSVFYPSIKLTLGPVTGSWLRKGVSLHEDS
PVATSDPRQLVQKATQGRFQLLGDPQKHDCSLFIRDAQKNDTGMYFFRVVREPFVRYSYKKSQLSLHVTS
LSRTPDIIIPGTLEAGYPSNLTCSVPWACEQGTPPTFSWMSTALTSLSSRTTDSSVLTFTPQPQDHGTKL
TCLVTFSGAGVTVERTIQLNVTRKSGQMRELVLVAVGEATVKLLILGLCLVFLIVMFCRRKTTKLSVHMG
CENPIKRQEAITSYNHCLSPTASDAVTPGCSIHRLISRTPRCTAILRIQDPYRRTHLRNRAVSTLRFPWI
SWEGSLRSTQRSKCTKLCSPVKNLCPLWLPVDNSCIPLIPEWVMLLCVSLTLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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