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Report for CCDS51712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51712.1 Public Mus musculus 6 Samd9l 23 108 98 CCDS HistoryNCBI Gene:209086Re-query CCDS DB by CCDS ID:51712.1Re-query CCDS DB by GeneID:209086See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51712.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120087.5 ENSMUSP00000112688.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120087.5Link to Ensembl Protein Viewer:ENSMUSP00000112688.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120087Re-query CCDS DB by Protein ID:ENSMUSP00000112688
Original member NCBI NM_010156.3 NP_034286.2 Updated not alive Link to Nucleotide Sequence:NM_010156.3Link to Protein Sequence:NP_034286.2Re-query CCDS DB by Nucleotide ID:NM_010156Re-query CCDS DB by Protein ID:NP_034286
Current member NCBI NM_010156.4 NP_034286.2 Accepted alive Link to Nucleotide Sequence:NM_010156.4Link to Protein Sequence:NP_034286.2Re-query CCDS DB by Nucleotide ID:NM_010156Re-query CCDS DB by Protein ID:NP_034286Link to BLAST:NP_034286.2

Chromosomal Locations for CCDS 51712.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 3372520 3377259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4740 nt):
ATGAGTGGACAAGTAACTCAACCAAAATTGATCAAAGACTGGACCAAAGAACATGTAAGAAAATGGGTTA
CT
GAAGATCTTAACATTGTTGAGAAATATGCTCAAATCTTGTTCAAAGAAGAGGTAACAGGGATGGTCCT
G
CAGGAATTAACTGAAGAGGATCTTAGAGAAATGGGCTTGCCACGGGGTCCAGCACTTCTGATAAAACGC
ATG
TATAACAAACTAATTAGTTCCCCTGAAAGTCACAATCAAGATTCCAGAGAATTAAATGATAAAAAAC
TC
TCAACAAAAGAACAGCAAACAAAGACCAAAAATGAGGAAGAAAACTCAGTTTCATCCAACAGTGATCA
T
GGTCTCAGGGAGACAGGGCAGAATGAAGAACAAGAACCAAGTCTTACGAAAGAAAACATGTTAGGTGAT
GTG
GTGACTAAAGACATGGAAGATAATAAGCCCAAACCAGAACAGATGTCTTGCACGCCATACCCTTTTG
AT
TCTTTTTGTGATGTCAAACAATACATAGAACATTCTATTCTACGTGTTGCTGAGACAGGGCCACTCAA
T
CTCATTGACCCAATACATGAATTCAAAGCCTTTACAAACACAAAGAAAGCCACAGAAGAGGACATAAAA
ATG
AAATTTAGCAATGAGACTTTCCGATTTGCAGCAGCTTGTATGAATTCACGTACCAATGGCACTATTC
AT
TTTGGAGTAAAAGACAAACCACACGGGGAAATTGTTGGTGTGCAAGTCACCAGTAAAGATATCTTTGT
T
AACCATTTCAACACAATGATCACGAAGTATTTTGAAGACAGTGAAATCAGTGAAGCCAGGGCTTGTATC
CGG
GAACCACGGTTCGTGGAAGTCCTTTTGCAGAATAATACACAATCTAATAGATTTGTCATTGAGGTAG
AT
GTTATTCCCAGACATTCTATATGTCAAGAAAAGTATTTCTACATTATGATGCAAAGTAGCACAGGCAA
A
ACATGGAAACAAAGCAAAGATACTTCATTGTTTGTAAGAGAAGGAGCTAGCTCTAAGAATATCCTGGGC
AAT
CCCAACCAACGGGATAGAGAGTTCAAGAAATTTCTAGAGGATTTAAAGATGTGGACAGCGTCTAGAA
AA
GCGGCCGAAGAAGAACTTAGAATGGTAACTAAGAAAGAGAGTGAAGGACTAAAACTGTCTAAACTTTT
G
ACCAGACACCAAGGCTCACTTGATGAATCTTACTATGATTGGTACATTCTTGTAACAAATACCTGTGCA
CCA
ACTCAATTAGAGCACTTAGAGTTCATAAAGGAAATGAAATTGTTTGCTGTGCTAGATTTTGATCCTT
AT
TCTCACATCAAGGGAGTGGTCAAAGCTTACAGAGAAAGCAGAATAGCAAACCTTCACCTGCCCAGTCA
C
TATGAGGAAAAAACTACCATAGCAGAGAAAATTTCTACTCTGAAACTTTATGAGCAACCTAGCTGGATC
TTC
TGCAATGGCAGAGTAGACTTGTCATGTCAACCTCTAGAGCCACATTTATGGCAGAGAGATAGAGCTT
CT
GGGGTTAGAAGACTTATTTCATTCCTCACAGACGAAAATATCATAGTAAAAGGGAAGGTTTTGGTGGT
G
TTCCTCTTACTTTCTCCCATAGAAAACCAAAAAGATCCACTCATTGAGACTTTTTGTGCTTTCTATCAA
GTT
TTCAATGGAATGGACAATATGTTGTGTATCTGTGTCAACTCAGCTATCTACCAACAATGGAGTGATC
TA
CTACAAGTAAGACTGGAAATCAAAGATGATCTGGCAAAACATAGCATTTCCACTTTAAACATAGAACT
A
GTCAACAATACCATCCTCAAACTGAAATCAGTGATTCAATCTTCAAGGAGATTTTTGCCCTCCTGTGGC
TCC
TCCTCTGTTATTCTGGAGAAAATGGATGAAGATATCATGAGTGCATTGGAAATCCTCTGTGAAAATG
AG
TGTAAAGACACAGACATAGAGAAAGATGAATCTCAATTCCTAGAATTTAAGAAATCAAGAGAAGAACA
C
TTTTATCGAGGAGGCAGAGTATCCTGGTGGAATTTCTATTTTTCTTCTGAAAACTATTCTTCAGCTTTT
GTA
AAAAGGGATAGTTTTGAAGAGCTAACAACATTAATACAACAGTGTGCAGACTCTCCTAAACCAGTGT
TT
GTCAAAGTCATCAACCTGTACCATCACCCAGGCTGTGGAGGTACTACGTTGGCGATGCATGTTCTCTG
G
GACTTAAAGCAGAAGTTTCGGTGTGCTGTCTTGAAAAACAAAGCAACTGATTTTGTAGAGATTGGAGAA
CAA
GTAAGCAAGCTAATGAGCTACAAGGCTACCAGCCACGAGGACTTCATTCCCGTTCTTCTCCTTGTGG
AT
GATTTCGAAGAACAAGAGAACGCCTATATTCTGCAGAATGCCATCAATGCCTTTATAGCAGAAAAGGG
T
CTGAGATATGAAAAAACATTAGTCATAATCCTGAACTGCATGAGATCTCAGAATCCAGATGAAAGTGCA
AAG
TTAGCAAATAGCATTTCACTAAAATACCAACTTTCTCCAAAAGAACAAAGAGCCTTTGAGGCCAAAC
TA
CAGGAAATTGAAAAGGAGCATAAGAACTGTGAAAACTTTTATTCGTTCATGATCTTGAAAGGCAACTT
T
GATACAACTTACATAAAGAATGTAGTGAAGAATACTCTGAAGGACCTGGATGCTAAAAGCAGGAGGGCC
CAG
CTCATTTCTTACCTGGCATTACTCAACTCTTATGTTACAGATTCTACCATTTCAGTATCACAGTGTG
AA
ATATTTTTGGGAATCACTTACACCAAGAAATATGGGAAACCTGAAACTGTAGAAAAGAACATGGGAAC
C
TATTCCACACTTCTAATAAGAACTGAAGTTTCAGATTATGGGAGGTACACTGGTATACGTATCATTCAC
CCT
CTAATTGCCACCCACTGTTTAAAAGAACTGGAAATGAGCTACAGAATGGATAAGTGTCAGATTGCAC
TA
AATATGCTAGAAGAGAATGTATTGTATGATTCTGGTCTAGGAAGGGACAAATTTAAATATGATGTGCA
A
ACTCTATTGCTTACAAGACAACGCAAGGAACATGGAGCTGAAACAGACACTCTCTTTTCCCCATTGATT
GAA
GAATTGCAGAATGAGGAAACTGAAAAGGTCTTGATCGCAGGAAGTGATCGATTCCCACAAAATGCAT
TC
ATTTGTCAAGCTTTAGCAAGACACTTCTATATTAAAGAGAAGAACTTTAGCACTGCTTTAGTCTGGGC
A
AATCTGGCCAAAAGGAAAGCACCTAAGAATTCTTATATTTCAGATACACTTGGTCAAGTTTACAAAAGT
GAG
CTCAAACAGTGGTTGGGTAAAAATAAGACATGTGGAAATATTAGTGTGGATGATCTGGCCTATTTCC
TA
GAAGTTGCTGAAAAGGCTTCAAAAGCCTTCAAAGAGTCTCAGAATCAATCTGATAGTAAGGACTATGG
A
ACTGAGGCATGGTCACCACAGAATTCCCAAAGAAGATATGACACTTTCAACACAGCCGGCTTCTTCGGA
GAA
ATAGAAGTAGGTCTTGACACTATCCAGCTTCTTCAGCTCACACCCCTTTTCCATAAAGAAAATGAAA
TA
TCAAAAGAATCTATGGCAGAGTTTTTATCTGGAAAGGGGACCATCCTTTCAGACCCAAAAGGTGAATA
T
TGTGTTGTTCTCAGCAAATTTACATCCCTTCTACAGAATTTACATTCAGATTTGGAAAGATGTTTTCAT
TTT
TTTGGTGATTATATGGGTTTTCTGAAACCAAGGAATACTCCAAAAGAATTGACAGAACTCTTACTAA
GT
AAGAAAGTCAGCCGCTGTTTCAAGAAATATGTAGAACTTTTCTGCCATTTAGATACCAACTTGGTACA
G
GGCAAAGAAGATCTGTTACTTCAAAAGGAGAACTGTAGGAAGCGCATACAAGCTTGGCGAGCAGATACA
TTT
TCAGGACTCCTTGAATATCTTAATCCAAATCACAAAGAAGCTAACAACATAGAAAATATAGTGGGAA
AC
TATACCTTCCTATTACAGGATATCCTAAACAAGCAACTGTCAAAGGTGCTGACCAAGGACATACAAAA
T
TTCATTTTGGCCAACATTATTCTCAGTTGTCTAAAGCCCAGTTCCAAGTATATCTTGCCATTTAGCACA
CTG
AAAAAAAAGCTCAGAGAGGTCCTGCAGATTGTGGGGCTAACTCATTCATATCCTGATCCTTATTTCT
TG
GCCTGCCTCCTATTCTGGCCAGAAAACAAAGAGCTAGATGAAGACTCCACACTAATAGAAAAGTATGT
C
TCATCCTTGAATCGATCCTTCAGGAGACAGTACAAGCACATGTGTAGGTCCAGGCAGCCAAGCACACTC
TTC
TACCTGGGGCAGAAGAAGGGTCTTAACAGTCTTGTTCATAAGGCTGAAATCGAGCGCTACTTCAGTG
AA
GTGCAAGATTCAAATTCCTTCTGGCACAGTGGAGTAGTGTGGGAAAAAAGAGAGGTCAAAGACCTCCT
A
CGCCTGCTGGATGGCCAGGCTGAAGGCAAACTAATCTCACTAGAATATGGAACAGAGGCAAAAATAAAA
ATA
CCAGTGACTTCTGTGTATTCAGCTCCACTCAGAAGTGGAAGGAACATAGAGAGAGTGTCCTTCTACC
TA
GGATTTTCCATTGAGGGTCCTCTGGCATATGGCATAAAAGTGATCTAA


Translation (1579 aa):
MSGQVTQPKLIKDWTKEHVRKWVTEDLNIVEKYAQILFKEEVTGMVLQELTEEDLREMGLPRGPALLIKR
M
YNKLISSPESHNQDSRELNDKKLSTKEQQTKTKNEEENSVSSNSDHGLRETGQNEEQEPSLTKENMLGD
V
VTKDMEDNKPKPEQMSCTPYPFDSFCDVKQYIEHSILRVAETGPLNLIDPIHEFKAFTNTKKATEEDIK
M
KFSNETFRFAAACMNSRTNGTIHFGVKDKPHGEIVGVQVTSKDIFVNHFNTMITKYFEDSEISEARACI
R
EPRFVEVLLQNNTQSNRFVIEVDVIPRHSICQEKYFYIMMQSSTGKTWKQSKDTSLFVREGASSKNILG
N
PNQRDREFKKFLEDLKMWTASRKAAEEELRMVTKKESEGLKLSKLLTRHQGSLDESYYDWYILVTNTCA
P
TQLEHLEFIKEMKLFAVLDFDPYSHIKGVVKAYRESRIANLHLPSHYEEKTTIAEKISTLKLYEQPSWI
F
CNGRVDLSCQPLEPHLWQRDRASGVRRLISFLTDENIIVKGKVLVVFLLLSPIENQKDPLIETFCAFYQ
V
FNGMDNMLCICVNSAIYQQWSDLLQVRLEIKDDLAKHSISTLNIELVNNTILKLKSVIQSSRRFLPSCG
S
SSVILEKMDEDIMSALEILCENECKDTDIEKDESQFLEFKKSREEHFYRGGRVSWWNFYFSSENYSSAF
V
KRDSFEELTTLIQQCADSPKPVFVKVINLYHHPGCGGTTLAMHVLWDLKQKFRCAVLKNKATDFVEIGE
Q
VSKLMSYKATSHEDFIPVLLLVDDFEEQENAYILQNAINAFIAEKGLRYEKTLVIILNCMRSQNPDESA
K
LANSISLKYQLSPKEQRAFEAKLQEIEKEHKNCENFYSFMILKGNFDTTYIKNVVKNTLKDLDAKSRRA
Q
LISYLALLNSYVTDSTISVSQCEIFLGITYTKKYGKPETVEKNMGTYSTLLIRTEVSDYGRYTGIRIIH
P
LIATHCLKELEMSYRMDKCQIALNMLEENVLYDSGLGRDKFKYDVQTLLLTRQRKEHGAETDTLFSPLI
E
ELQNEETEKVLIAGSDRFPQNAFICQALARHFYIKEKNFSTALVWANLAKRKAPKNSYISDTLGQVYKS
E
LKQWLGKNKTCGNISVDDLAYFLEVAEKASKAFKESQNQSDSKDYGTEAWSPQNSQRRYDTFNTAGFFG
E
IEVGLDTIQLLQLTPLFHKENEISKESMAEFLSGKGTILSDPKGEYCVVLSKFTSLLQNLHSDLERCFH
F
FGDYMGFLKPRNTPKELTELLLSKKVSRCFKKYVELFCHLDTNLVQGKEDLLLQKENCRKRIQAWRADT
F
SGLLEYLNPNHKEANNIENIVGNYTFLLQDILNKQLSKVLTKDIQNFILANIILSCLKPSSKYILPFST
L
KKKLREVLQIVGLTHSYPDPYFLACLLFWPENKELDEDSTLIEKYVSSLNRSFRRQYKHMCRSRQPSTL
F
YLGQKKGLNSLVHKAEIERYFSEVQDSNSFWHSGVVWEKREVKDLLRLLDGQAEGKLISLEYGTEAKIK
I
PVTSVYSAPLRSGRNIERVSFYLGFSIEGPLAYGIKVI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser