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Report for CCDS51480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51480.1 Public Mus musculus 5 Tbc1d14 23 108 98 CCDS HistoryNCBI Gene:100855Re-query CCDS DB by CCDS ID:51480.1Re-query CCDS DB by GeneID:100855See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000130417.7 ENSMUSP00000116519.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130417.7Link to Ensembl Protein Viewer:ENSMUSP00000116519.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130417Re-query CCDS DB by Protein ID:ENSMUSP00000116519
Original member Current member EBI ENSMUST00000124036.7 ENSMUSP00000117414.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124036.7Link to Ensembl Protein Viewer:ENSMUSP00000117414.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124036Re-query CCDS DB by Protein ID:ENSMUSP00000117414
Original member Current member NCBI NM_001113362.1 NP_001106833.1 Accepted alive Link to Nucleotide Sequence:NM_001113362.1Link to Protein Sequence:NP_001106833.1Re-query CCDS DB by Nucleotide ID:NM_001113362Re-query CCDS DB by Protein ID:NP_001106833Link to BLAST:NP_001106833.1

Chromosomal Locations for CCDS 51480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36493049 36493114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36495018 36495276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36505025 36505134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36507578 36507706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36508360 36508431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36512454 36512548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36514039 36514119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36519273 36519379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36520444 36520561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36522927 36523009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36524930 36525048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36543177 36543297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36571296 36572037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36584782 36584824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2145 nt):
ATGAGGCTTTATCTAGACCGCTTCTGGGGACTGATGGCAAAAGTTTCTTCTGGGACCAAGATGACTGATG
GAAACCTTTCCACCTCGATGAATGGTGTAGCATTGATGGGCATCCTAGATGGTCGGCAAGGAGACTCCCT
TCAGGACCTACAACACCTTAGTATCAAGGCGGCTCCCAGATCCCTTTCAGTGCCTGACTACGGACCTTCA
CTAAAACTTGGTGCTTTGGAAGATCGACACAGCCTTCAATCAGTGGACTCGGGCATTCCTACCCTGGAGA
TTGGCAACCCAGAGCCTGTTCCCTGCAGTGTGGTCCATGTGAAGAGAAAGCAGTCTGAGTCAGAGATCGT
CCCGGAGCGGGCCTTCCAGAGTGCATGCCCGCTGCCGTCGTGCACACCCTCAGCTCCCACCTGCAGCGAG
CGGGAGCAGGTTGTGCGGAAGTCTTCCACATTTCCTAGGACAGGCTATGACTCAGTGAAACTCTACAGCC
CCACCTCCAAAGCCTTGAGCCGAAGTGACAATGTCTCTGTCTGCAGTGTGTCTAGTCTTGGCACAGAGCT
GTCAACTACGTTGTCGGTCAGCAATGAGGACATCTTGGACCTCATGGTCACGAGCAATTCCAGCGCTATT
GTGACCCTGGAGAATGATGATGACCCACAGTTTACTGACGTCACCCTGAGCTCCATCAATGAAACCAGCG
ACTTACACCAGCAGGACTGTGTTGCTGAGACTGAGGAGGGGAGGAAATTGAAACTATTGCACCCATTCAG
TCACTTCTTTACAAGGAATTTGCTTGCTAGAAAACAAAATGCAAGGCTTGATAGACAGAGAGACTTGGGA
TGGAAGCTGTTTGGAAAAGTCCCACTCCGAGAGACTGCTCAGAAAGATTCAAAGAAGACCCAGAAGGAAT
ATGAAGACAAGGCTGGAAGACCGAGCAGGCCACCCTCTCCCAAGCAGAATGTGAGGAAGAACCTGGATTT
TGAGCCACTGTCCACCACGGCGCTCATCCTCGAGGACAGACCTGCAAATCTCCCAGCCAAGCCAGCTGAA
GAAGCTCAAAAGCACAGACAGCAGTATGAAGAGATGGTGCTGCAGGCCAAGAAACGAGAGCTTAAAGAAG
CCCAGCGTCGGAGGAAGCAGCTGGAGGAAAGGTGCAAGGTTGAAGAGAGCATTGGGAACGCTGTCCTCAC
CTGGAACAATGAGATCTTGCCTAACTGGGAAACCATGTGGTGCTCTAAGAAGGTTCGAGACTTGTGGTGG
CAGGGAATCCCTCCGAGTGTAAGAGGCAAAGTTTGGAGCTTGGCCATTGGCAACGAGTTGAACATCACTC
ACGAGCTCTTTGACATCTGTCTTGCTCGGGCCAAGGAGCGGTGGCGGTCCCTCAGCACTGGAGGCTCAGA
AGTGGAGAATGAAGATGCTGGGTTTTCAGCAGCAGACAGAGAGGCCAGTCTGGAGCTTATTAAACTGGAC
ATTTCTAGAACATTTCCTAATCTCTGCATTTTCCAGCAAGGTGGTCCGTATCATGACATGTTGCACAGTA
TTTTGGGCGCTTATACTTGTTACCGGCCGGATGTGGGTTATGTTCAGGGCATGTCCTTTATAGCTGCAGT
GTTGATCTTGAACCTCGATACTGCAGATGCCTTTATTGCTTTTTCTAATCTTTTGAATAAACCCTGTCAA
ATGGCGTTTTTCCGAGTGGACCATGGCCTTATGTTGACTTACTTTGCTGCATTTGAGGTATTCTTTGAAG
AAAACTTGCCGAAATTGTTTGCGCATTTCAAGAAAAACAACTTAACTGCAGATATCTACCTAATCGATTG
GATTTTCACCTTGTACAGTAAGTCCCTGCCCTTGGACTTGGCCTGCCGCATCTGGGACGTATTCTGTCGA
GATGGAGAGGAATTTCTCTTCCGCACAGCTCTGGGCATCCTGAAGCTTTTTGAAGATATCCTGACCAGGA
TGGACTTCATCCACAGTGCCCAGTTTCTGACCAGGCTGCCTGAGGACCTGCCCGCAGATGAAGTGTTTGC
AGCTATCTCCACAGTCCAGATGCAAAGCCGGAACAAGAAATGGGCACAGGTGCTGTCTGCACTGCAGAAA
GACAGCCGGGAGATGGAGAAAGGAAGCCCATCCCTCAGACACTGA

Translation (714 aa):
MRLYLDRFWGLMAKVSSGTKMTDGNLSTSMNGVALMGILDGRQGDSLQDLQHLSIKAAPRSLSVPDYGPS
LKLGALEDRHSLQSVDSGIPTLEIGNPEPVPCSVVHVKRKQSESEIVPERAFQSACPLPSCTPSAPTCSE
REQVVRKSSTFPRTGYDSVKLYSPTSKALSRSDNVSVCSVSSLGTELSTTLSVSNEDILDLMVTSNSSAI
VTLENDDDPQFTDVTLSSINETSDLHQQDCVAETEEGRKLKLLHPFSHFFTRNLLARKQNARLDRQRDLG
WKLFGKVPLRETAQKDSKKTQKEYEDKAGRPSRPPSPKQNVRKNLDFEPLSTTALILEDRPANLPAKPAE
EAQKHRQQYEEMVLQAKKRELKEAQRRRKQLEERCKVEESIGNAVLTWNNEILPNWETMWCSKKVRDLWW
QGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLD
ISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQ
MAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTADIYLIDWIFTLYSKSLPLDLACRIWDVFCR
DGEEFLFRTALGILKLFEDILTRMDFIHSAQFLTRLPEDLPADEVFAAISTVQMQSRNKKWAQVLSALQK
DSREMEKGSPSLRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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