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Report for CCDS51322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51322.1 Public Mus musculus 4 Pigv 23 108 98 CCDS HistoryNCBI Gene:230801Re-query CCDS DB by CCDS ID:51322.1Re-query CCDS DB by GeneID:230801See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067902.12 ENSMUSP00000065601.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067902.12Link to Ensembl Protein Viewer:ENSMUSP00000065601.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000067902Re-query CCDS DB by Protein ID:ENSMUSP00000065601
Original member Current member NCBI NM_001145956.1 NP_001139428.1 Accepted alive Link to Nucleotide Sequence:NM_001145956.1Link to Protein Sequence:NP_001139428.1Re-query CCDS DB by Nucleotide ID:NM_001145956Re-query CCDS DB by Protein ID:NP_001139428Link to BLAST:NP_001139428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139428.1 119 Q7TPN3-2 119 100% 0 0

Chromosomal Locations for CCDS 51322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133662510 133662791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133669738 133669815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGGGACTCCTGGACCCATCCCAGAAAGAGGTGCTGAGATTCGCAGTAAACTGCCGCATCCTGACTCTAG
TGCTACAGGTTCTCACGCGGTTTTTGGCCTCTTCCACTCCTATCATGTACTGGTTTCCAGCTCACCTGCT
TCAGGATCAAGAACCGCTGCTGAGGTGTGTGGACACAGAGCCTGGGAAGCTTCCTCAGGAGAAGTCCCCA
CCAGGACAGAAGGCCCCCAGAAACTGTCTCATGAAACTCTTCTACGATTGGAAGAGATGCTCTCCAGTCA
CAAGATGCGTTCTGGTCTACTTCCTGACCTACTGGCTTCTGGGACTAATTCTCCATTGCAACTTCCTGCC
TTGGACTTGA

Translation (119 aa):
MGLLDPSQKEVLRFAVNCRILTLVLQVLTRFLASSTPIMYWFPAHLLQDQEPLLRCVDTEPGKLPQEKSP
PGQKAPRNCLMKLFYDWKRCSPVTRCVLVYFLTYWLLGLILHCNFLPWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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