NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50996.1 Public Mus musculus 3 Tars2 23 108 98 CCDS HistoryNCBI Gene:71807Re-query CCDS DB by CCDS ID:50996.1Re-query CCDS DB by GeneID:71807See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50996.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074339.12 ENSMUSP00000073946.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074339.12Link to Ensembl Protein Viewer:ENSMUSP00000073946.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074339Re-query CCDS DB by Protein ID:ENSMUSP00000073946
Original member Current member NCBI NM_001163617.1 NP_001157089.1 Accepted alive Link to Nucleotide Sequence:NM_001163617.1Link to Protein Sequence:NP_001157089.1Re-query CCDS DB by Nucleotide ID:NM_001163617Re-query CCDS DB by Protein ID:NP_001157089Link to BLAST:NP_001157089.1

Chromosomal Locations for CCDS 50996.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95740171 95740319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95741322 95741436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95742074 95742146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95742316 95742417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95742578 95742678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95746033 95746170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95746535 95746697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95747439 95747656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95748042 95748140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95748487 95748633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95750339 95750417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95750701 95750765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95750867 95750984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95751506 95751630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95753007 95753130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95754319 95754515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95754758 95754838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGGGTCTCTGTCTGAGGTGGCGCCGGCTTGGGTTCCCACTCCCAGAGTTCCGCCGCTGCGAGCTCCACA
CCGTGCGTGAGGCCTCTGCACCAACTCCTCCACATTGGTTGGCAGAACGATTTGGCCTTTTTGAGGAGCT
ATGGACCGCTCACGTGAAAAAGTTAGCAAGTATGACACAGAAGAAAGCCCGGGCTATTAAGATATCACTT
CCTGAAGGCCAGAAGGTAGATGCTGTTGCATGGAACACAACCCCTTACCAACTGGCCCATCAGATCAGTG
TAACACTGGCTGATACTGCAGTGGCTGCTGAAGTAAATGGAGAACTTTACGATCTGGACCGACCCTTGGA
GACAGATTGTCACCTCAGATTTCTGACATTTGATTCCCCAGAGGGCAAAGCGGTGTTCTGGCACTCTAGT
GCCCATGTTCTGGGGGCTGCGGCTGAGCAACAACTGGGTGCTGTTCTCTGCCGAGGTCCAAGCACAGAAT
CGGGCTTTTACCATGACTTCTTCCTGGGAAAAGAACGGACAGTCCGCAGCGCAGAGTTGCCCATTTTAGA
GCGGATTTGCCAGGAGCTCATAGCTGCTGCACAGCCTTTCCGGAGGCTGGAGGCTTCACGGGATCAGCTT
CGCCAGCTCTTCAAGGACAACCACTTTAAGCTTCATCTGATCGAGGAGAAAGTGACAGGCCCAACGGCAA
CAGTGTATGGGTGTGGCATGTCAGTTGACCTGTGCCGAGGCCCCCATCTTCGGCACACTGGACAGATTGG
AGCACTGAAGCTGCTCACGAACTCCTCAGCCTTGTGGAGGTCCTTGGGAGCACCTGAGACACTGCAGAGG
GTATCAGGAATTTCTTTCCCCAAAGTAGAGTTACTGAGGAACTGGGAAGCTCGAAGAGAAGCAGCAGAGT
TAAGAGACCACAGACGCATTGGGAAGGAACAGGAGCTCTTCTTCTTCCATGAACTGAGCCCTGGGAGCTG
TTTTTTCTTGCCACGAGGGACAAGAGTCTATAATGCCCTGGTGGCTTTCATCAGGGCTGAGTATGCCCGC
CGTGGTTTCTCAGAGGTGAAAACTCCCACGCTGTTTTCTACAAAACTCTGGGAACAGTCAGGGCACTGGG
AACACTATAGGGCAGACATGTTTTCCCTGAAGCCCCCTGGCACTGATGGTGTTGACAACTCCCAGAGTGG
CCATCCTGCCAGGTGTCCCAAAGACACACTTGCTCTAAAGCCCATGAACTGCCCTGCACACTGCCTGATG
TTTGCCCACCGGCCCAGATCCTGGAGGGAACTGCCTGTGCGACTGGCTGATTTCGGAGCCCTGCATCGGG
CTGAGGCCTCTGGCAGTCTGGGAGGATTAACGCGGCTGTGGCGCTTCCAGCAGGATGATGCGCACATCTT
TTGTGCACCCCATCAGCTGGAAGCAGAGATCCAGGGCTGCCTTGATTTTCTCCGGTGTGTTTACTCGGTT
CTTGGTTTTTCCTTCCACCTGGCTTTATCTACCCGGCCACCTGGTTTCCTAGGGGAGCCTCGCCTATGGG
ACCAGGCTGAGCAGATTGATGTGCACCTCCACGACGCCCTTGGTCGGCCCCATCAGTGTGGAACAATCCA
GCTTGACTTCCAGCTGCCACTGAGATTTGACCTACAATACAAGGGGCCGGCAGGTACCCCAGAGTGTCCA
GTCCTTATTCATCGAGCAGTGCTTGGTTCTGTGGAAAGGCTGTTGGGAGTGCTGGCAGAAAGCTGTGGGG
GGAAATGGCCCCTGTGGCTGTCCCCGCTCCAGGTGGTGGTCATCCCTGTGAGGACAGAGCAAGAGGAATA
TGCCAGGCAGGTGCAACAGTGCCTGCAGGCTGCAGGACTTGTGAGTGATCTCGATGCAGACTCTGGACTG
ACCCTCAGCCGGAGAGTCCGCCGGGCCCAGCTTGCCCACTACAACTTTCAGTTTGTGGTTGGCCAGAGAG
AGCAGAGTCAAAGGACAGTGAACGTACGCACGCGAGATAACCGGCAGCTCGGGGAGCGAGACCTGGCCGA
GTCCGTGCAGAGACTGCTGGAGTTACAGAACGCCAGGGTCCCCAATGCAGAAGAAGTGTTCTGA

Translation (697 aa):
MGLCLRWRRLGFPLPEFRRCELHTVREASAPTPPHWLAERFGLFEELWTAHVKKLASMTQKKARAIKISL
PEGQKVDAVAWNTTPYQLAHQISVTLADTAVAAEVNGELYDLDRPLETDCHLRFLTFDSPEGKAVFWHSS
AHVLGAAAEQQLGAVLCRGPSTESGFYHDFFLGKERTVRSAELPILERICQELIAAAQPFRRLEASRDQL
RQLFKDNHFKLHLIEEKVTGPTATVYGCGMSVDLCRGPHLRHTGQIGALKLLTNSSALWRSLGAPETLQR
VSGISFPKVELLRNWEARREAAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYAR
RGFSEVKTPTLFSTKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLM
FAHRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCAPHQLEAEIQGCLDFLRCVYSV
LGFSFHLALSTRPPGFLGEPRLWDQAEQIDVHLHDALGRPHQCGTIQLDFQLPLRFDLQYKGPAGTPECP
VLIHRAVLGSVERLLGVLAESCGGKWPLWLSPLQVVVIPVRTEQEEYARQVQQCLQAAGLVSDLDADSGL
TLSRRVRRAQLAHYNFQFVVGQREQSQRTVNVRTRDNRQLGERDLAESVQRLLELQNARVPNAEEVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH