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Report for CCDS50994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50994.1 Public Mus musculus 3 Tars2 23 108 98 CCDS HistoryNCBI Gene:71807Re-query CCDS DB by CCDS ID:50994.1Re-query CCDS DB by GeneID:71807See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163530.7 ENSMUSP00000130269.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163530.7Link to Ensembl Protein Viewer:ENSMUSP00000130269.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163530Re-query CCDS DB by Protein ID:ENSMUSP00000130269
Original member Current member NCBI NM_001163618.1 NP_001157090.1 Accepted alive Link to Nucleotide Sequence:NM_001163618.1Link to Protein Sequence:NP_001157090.1Re-query CCDS DB by Nucleotide ID:NM_001163618Re-query CCDS DB by Protein ID:NP_001157090Link to BLAST:NP_001157090.1

Chromosomal Locations for CCDS 50994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95740171 95740319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95741322 95741436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95742074 95742146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95742316 95742417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95742578 95742678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95745785 95745862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95746033 95746170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95746535 95746697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95747439 95747656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95748042 95748140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95748487 95748633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95750339 95750417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95750701 95750765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95753007 95753130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95754319 95754515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95754758 95754838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGGGTCTCTGTCTGAGGTGGCGCCGGCTTGGGTTCCCACTCCCAGAGTTCCGCCGCTGCGAGCTCCACA
CCGTGCGTGAGGCCTCTGCACCAACTCCTCCACATTGGTTGGCAGAACGATTTGGCCTTTTTGAGGAGCT
ATGGACCGCTCACGTGAAAAAGTTAGCAAGTATGACACAGAAGAAAGCCCGGGCTATTAAGATATCACTT
CCTGAAGGCCAGAAGGTAGATGCTGTTGCATGGAACACAACCCCTTACCAACTGGCCCATCAGATCAGTG
TAACACTGGCTGATACTGCAGTGGCTGCTGAAGTAAATGGAGAACTTTACGATCTGGACCGACCCTTGGA
GACAGATTGTCACCTCAGATTTCTGACATTTGATTCCCCAGAGGGCAAAGCGGACAACCACTTTAAGCTT
CATCTGATCGAGGAGAAAGTGACAGGCCCAACGGCAACAGTGTATGGGTGTGGCATGTCAGTTGACCTGT
GCCGAGGCCCCCATCTTCGGCACACTGGACAGATTGGAGCACTGAAGCTGCTCACGAACTCCTCAGCCTT
GTGGAGGTCCTTGGGAGCACCTGAGACACTGCAGAGGGTATCAGGAATTTCTTTCCCCAAAGTAGAGTTA
CTGAGGAACTGGGAAGCTCGAAGAGAAGCAGCAGAGTTAAGAGACCACAGACGCATTGGGAAGGAACAGG
AGCTCTTCTTCTTCCATGAACTGAGCCCTGGGAGCTGTTTTTTCTTGCCACGAGGGACAAGAGTCTATAA
TGCCCTGGTGGCTTTCATCAGGGCTGAGTATGCCCGCCGTGGTTTCTCAGAGGTGAAAACTCCCACGCTG
TTTTCTACAAAACTCTGGGAACAGTCAGGGCACTGGGAACACTATAGGGCAGACATGTTTTCCCTGAAGC
CCCCTGGCACTGATGGTGTTGACAACTCCCAGAGTGGCCATCCTGCCAGGTGTCCCAAAGACACACTTGC
TCTAAAGCCCATGAACTGCCCTGCACACTGCCTGATGTTTGCCCACCGGCCCAGATCCTGGAGGGAACTG
CCTGTGCGACTGGCTGATTTCGGAGCCCTGCATCGGGCTGAGGCCTCTGGCAGTCTGGGAGGATTAACGC
GGCTGTGGCGCTTCCAGCAGGATGATGCGCACATCTTTTGTGCACCCCATCAGCTGGAAGCAGAGATCCA
GGGCTGCCTTGATTTTCTCCGGTGTGTTTACTCGGTTCTTGGTTTTTCCTTCCACCTGGCTTTATCTACC
CGGCCACCTGGTTTCCTAGGGGAGCCTCGCCTATGGGACCAGGCTGAGCAGGTTCTACAGCAAGCCTTGG
AGAAGTTTGGAGAACCTTGGGACCTCAACCCTGGAGATGGGGCTTTCTATGGGCCTAAGATTGATGTGCA
CCTCCACGACGCCCTTGGTCGGCCCCATCAGTGTGGAACAATCCAGCTTGACTTCCAGCTGCCACTGAGA
TTTGACCTACAATACAAGGGGCCGGCAGGTACCCCAGAGTGTCCAGTCCTTATTCATCGAGCAGTGCTTG
GTTCTGTGGAAAGGCTGTTGGGAGTGCTGGCAGAAAGCTGTGGGGGGAAATGGCCCCTGTGGCTGTCCCC
GCTCCAGGTGGTGGTCATCCCTGTGAGGACAGAGCAAGAGGAATATGCCAGGCAGGTGCAACAGTGCCTG
CAGGCTGCAGGACTTGTGAGTGATCTCGATGCAGACTCTGGACTGACCCTCAGCCGGAGAGTCCGCCGGG
CCCAGCTTGCCCACTACAACTTTCAGTTTGTGGTTGGCCAGAGAGAGCAGAGTCAAAGGACAGTGAACGT
ACGCACGCGAGATAACCGGCAGCTCGGGGAGCGAGACCTGGCCGAGTCCGTGCAGAGACTGCTGGAGTTA
CAGAACGCCAGGGTCCCCAATGCAGAAGAAGTGTTCTGA

Translation (642 aa):
MGLCLRWRRLGFPLPEFRRCELHTVREASAPTPPHWLAERFGLFEELWTAHVKKLASMTQKKARAIKISL
PEGQKVDAVAWNTTPYQLAHQISVTLADTAVAAEVNGELYDLDRPLETDCHLRFLTFDSPEGKADNHFKL
HLIEEKVTGPTATVYGCGMSVDLCRGPHLRHTGQIGALKLLTNSSALWRSLGAPETLQRVSGISFPKVEL
LRNWEARREAAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPTL
FSTKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLMFAHRPRSWREL
PVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCAPHQLEAEIQGCLDFLRCVYSVLGFSFHLALST
RPPGFLGEPRLWDQAEQVLQQALEKFGEPWDLNPGDGAFYGPKIDVHLHDALGRPHQCGTIQLDFQLPLR
FDLQYKGPAGTPECPVLIHRAVLGSVERLLGVLAESCGGKWPLWLSPLQVVVIPVRTEQEEYARQVQQCL
QAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQREQSQRTVNVRTRDNRQLGERDLAESVQRLLEL
QNARVPNAEEVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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