NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50956.1 Public Mus musculus 3 Rusc1 23 108 98 CCDS HistoryNCBI Gene:72296Re-query CCDS DB by CCDS ID:50956.1Re-query CCDS DB by GeneID:72296See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50956.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166687.5 ENSMUSP00000130477.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166687.5Link to Ensembl Protein Viewer:ENSMUSP00000130477.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166687Re-query CCDS DB by Protein ID:ENSMUSP00000130477
Original member NCBI NM_001083808.1 NP_001077277.1 Updated not alive Link to Nucleotide Sequence:NM_001083808.1Link to Protein Sequence:NP_001077277.1Re-query CCDS DB by Nucleotide ID:NM_001083808Re-query CCDS DB by Protein ID:NP_001077277
Current member NCBI NM_001083808.2 NP_001077277.1 Accepted alive Link to Nucleotide Sequence:NM_001083808.2Link to Protein Sequence:NP_001077277.1Re-query CCDS DB by Nucleotide ID:NM_001083808Re-query CCDS DB by Protein ID:NP_001077277Link to BLAST:NP_001077277.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077277.1 431 Q8BG26-2 431 100% 0 0

Chromosomal Locations for CCDS 50956.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89084482 89084650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89086773 89086895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89087719 89088268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89088800 89088846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89089000 89089105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89089177 89089351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89089485 89089561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89089669 89089717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGCAGAAGCCCAGAGTGGGACTGGCCAGCTGCAGGAGCAGAAGAAAGGTCTCCTGATAGCTGTCAGCG
CTTCAGTGGACAAAATCATCTCGCATTTTGGGGCTGCTAGGAACTTGGTTCAGAAGGCTCAATTGGGGGA
TAGCCGACTGAGCCCAGATGTGGGGCATCTGGTATTGACCACCCTCTGCCCGGCCCTCCATGCTTTGGTG
GCTGATGGGCTGAAGCCATTCCGGAAGGACCTCATCACTGGACAGCGGAGGAGCAGCCCTTGGAGTGTGG
TGGAGGCATCTGTGAAACCAGGTTCCTGCACACATTCGATGGGATCTCTGTACAGCCAGGTCAGCCGACT
GGCCCCTCTGAGTAGCAGCCGCAGCCGCTTCCACGCCTTCATCCTGGGCCTCCTCAACACCAAACAGTTG
GAACTGTGGTTTTCCAGCCTCCAGGAGGATGCAGGCCTACTGTCCCTCTTGTATCTGCCCACCGGATTCT
TCTCCCTGGCTCGTGGTAGCTGTCCATCCCTGGCTACAGAGCTGCTGCTTCTGCTGCAGCCACTGTCGGT
GCTCACCTTCCACCTGGACCTGCTCTTTGAGCACCACCACCACCTACCCGTGGGCCTGCAGCAGGCTCCT
GCCCCTTCATGCCCCCCTCCCGCCCTCCAGCAGACTATGCAGGCTGTGCTGCACTGGGGGGAACGTTTGG
CTCAGAGTCTCCGAGGGACTTCAGGGGAGAGCACTACAGACTCTTCAACCCCTTCAGCACGCCCTCCAGC
AGGCAGTTGGTGGGATCAGCTGACCCAGGCTTCTCGGGTCTATGCCTCTGGAGGCACTGAGGGCTTCCCT
CTTCTCCGGTGGGGACCCAGGCGTCATGGAACTACAGCTGAGGCGGCACAGGAGGCACCTCCGCCCACGG
AACAAACCACACCAGGCAGAAGCGTGTGGTTGGGGCGGCTATTTGGTGTGCCTGGGTGCCCCTCAGAAAC
TGAGAGTGGCGCCTTCAAGTCTAGGAGACCATCCAGCTGGTTGCCCCCAACAGTAAGTGTGCTGGCTCTG
GTGAAGAGGGGGACACCTCCTGAGACTCCTCCTGAGGCGCTTGTGAGCTCACCAGGCAGCGTGGTGCAGG
CTGACAGGGCAGTCCGGGCTCTCTGTGACCACACTGCTGCAGGACCTGACCAATTGAGCTTCCAGCGTGG
GGAATTGCTTCGAGTCATTGCCACAGTGGATGAAGACTGGCTTCGCTGTGGGCGGGATGGTGTGGAGGGA
CTGGTGCCCGTGGGATACACTTCCCTTGTTCTGTAG

Translation (431 aa):
MAEAQSGTGQLQEQKKGLLIAVSASVDKIISHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALV
ADGLKPFRKDLITGQRRSSPWSVVEASVKPGSCTHSMGSLYSQVSRLAPLSSSRSRFHAFILGLLNTKQL
ELWFSSLQEDAGLLSLLYLPTGFFSLARGSCPSLATELLLLLQPLSVLTFHLDLLFEHHHHLPVGLQQAP
APSCPPPALQQTMQAVLHWGERLAQSLRGTSGESTTDSSTPSARPPAGSWWDQLTQASRVYASGGTEGFP
LLRWGPRRHGTTAEAAQEAPPPTEQTTPGRSVWLGRLFGVPGCPSETESGAFKSRRPSSWLPPTVSVLAL
VKRGTPPETPPEALVSSPGSVVQADRAVRALCDHTAAGPDQLSFQRGELLRVIATVDEDWLRCGRDGVEG
LVPVGYTSLVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH