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Report for CCDS50872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50872.1 Public Mus musculus 3 Hps3 23 108 98 CCDS HistoryNCBI Gene:12807Re-query CCDS DB by CCDS ID:50872.1Re-query CCDS DB by GeneID:12807See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108321.1 ENSMUSP00000103957.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108321.1Link to Ensembl Protein Viewer:ENSMUSP00000103957.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108321Re-query CCDS DB by Protein ID:ENSMUSP00000103957
Original member Current member NCBI NM_001146323.1 NP_001139795.1 Accepted alive Link to Nucleotide Sequence:NM_001146323.1Link to Protein Sequence:NP_001139795.1Re-query CCDS DB by Nucleotide ID:NM_001146323Re-query CCDS DB by Protein ID:NP_001139795Link to BLAST:NP_001139795.1

Chromosomal Locations for CCDS 50872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 19996902 19997029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20002323 20002413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20003225 20003431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20008815 20008922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20010800 20010988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20011389 20011574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20012697 20012930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20014023 20014203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20015826 20016007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20018811 20018919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20019803 20019957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20022758 20022839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20025731 20025920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20028960 20029045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20029147 20029318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20030314 20030409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20035049 20035265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2613 nt):
ATGGTGCGTCTGTACAACCTGCACCCGTTTGGGTCGCAGCAGGTAGTCCCCTGCCAGTGGGAGCCGGAGC
AGGTCTGCTGCGGCGGGAGCGACGCGCTGTTCGTGGCTGCCGGCTGCAAGGTGGAGGCGTTCGCTGTTCA
GGGCGAAGAGCTGTGCCGGCAGCGCTGCGCCTTCTCCACGCTAGGCAGGGTGCTGCGCATGGCCTACAGC
GAAGCCGAAGTCTTACTCCTAAAACTGGAGTCAGACCCTATACATGGAGAGAGTGTTGACCACCACCCAC
AAGAAACCAGCAATCCATTGAAAGAGGCGGAAGGTGTCAGTAATGAAACTTCACAACTTGAGTCAGAAGA
TTTTGTTATCTGTCTAAAACCCATGGAACTCATTGGTGAAAAATGTGAACAGTCTGGGATATCTGTTAAA
CTGGAGTCCACAGGATTAGAAGATGAAAAAGTAAAATATTTACGTGTTCGGCATCTATTGTATAGACGTT
TTGCTCCAGATATTTCGTCCTATGTCTTGTCTGATAACATCAAGTTACATTCCCTTCAGCTGCTACCCAT
TCACCAAAGTGGTTTTCATCCTGATGAAAATGATTTATCGCCGAAAAAAGAGATGCCAAATCTCTTCTGT
TTCTTCTCGTTACCTCATGTGGGCTATCTGTACATGGTTGTGAAGTCTGTTGAATTAATGTCAGTCTATT
GGTATCCTGAGAAGTCTCAACAAGCCGTGCTCACACCACAGTTCTTGCATGTCATCACAAGCCAAAGCCT
GCAGTGTTTCACGGTGCGATGCAGTGCAGCGGTGGCACATGAGGAAGACCTATACATGGATACTACGCTA
AAGGCTTGCCCACCTGTCAGTATGGACGTTTGTGCTCTAAGGATACAGCTTTTCATAGGCTTGAAAGCCA
TCTGTCACTTTAAAAACCACATTATACTTCTGACGAAGGCAGAGCCTGAGGCCATTCCAGAGAGAAGAGA
GTCACCCAAGAAACTTATTTCTAGAAAAGATGCCAGTGTTAGGAGCGGAACCCCTCACGTGGCTGAAGCG
GCATGGAATCTGTATCTCGTGAACACCACGGCACCAGTGCAGCTGTACAAAGAAATGGTAGACTATAGTA
ACAGCTACAAGACCGTGAAAACCGAGAGCTGTCTCCACCTGCTCAGTGAGGCTCATCTGCTAGTGAGAGC
TGCCCTGATGGATGGCAGTCAGCTGGAGCCTGCAGAGAAAGCAGAACTCCTGGAAGCTTTTAAAGAAAGC
TGTGGACACCTTGGAGACTGTTACAGCAGGCTTACCACTGAGCAATCCCATCTCGCCTTGCCGTACTATA
AGATGTCTGGTTTGTCTCTGGCTGAAGTCTTGGCCCGTGTGGACTGGACAGAAGAGAGTGAATCACAGAA
ATATGAGAGAGGACTAGTATTTTATATTAATCATTCTCTTTATGAAAACCTGGATGAAGAATTAAGTAAA
GAATTAGCAGCAAAAGTGGCTCAGATATTCCACATGGCTGAGCCGAAGCAGCTGCCTCATGTTCTCTCTA
GCCCTTCTATGAAGAATATTGATCCCTTAACTGCCTTGCATTATTTAAGGAAGCTGGATAGTTGTGGAGT
TTCACCCGTCTTAGTGACCTTGACCAAGGCTGCAGTGGCCTTGAAAATGGGAGATCTTGACATGTACAGA
AATGAGATGAAAAGCCATTCGGAGATGAAGCTGGTGTATGGCTTCATTCTGGAACCCCGGCTGTTAATTC
AACAGTGGAAAGGACAGATTGTTCCTACAGAACTTGCGATTGACTTGAAGGAAACTCAGCCTGGATTGCT
TGTGGCTTCAGTCCTGGGCTTACAGAAGAATGATAAAATTGGAATTGTAGAAACAGATTCTTTCTTTAAG
GTGCTGTGTGGAAAGGATGAAGACGCAGTTCCGCAGCTTTTGATAGACTTCTGGGAAGCTCAGCTCGTAG
CTTGTCTCCCAAATGTGGTACTTGAGGAACTCTTTTTCAAGCTCATCTCTCAGTACGTTTGGAGGTTATC
TGAGAGGCGGTGTCCTGACACCGTACCACTGAGAACAGCGGAGGATTTGATAAATGCCTGCAGTCATTAT
GGCCTAGTAAATCCATGGGTTCATGTGTTAACGACATCTGATTCCTTAGCTGATAAAAATTACACAGACG
ACCTTCTGAAATTACAGTCTCTCATCTGTAGCCCTTCATTGGACGTAGCCTCCATTATTCCGTTTTTGGA
GCCACTCTCAGAAGACACTGTTGCCGGCCTCAGTACTCATGCTCTCTGCCATACACGCTTACAAGAGTAT
GAACAGTGCATAGACACGTTGCTAGAGAGATGCCCAGAGGCCGTCATTGCGTATGCTAATCAGGAACTGA
AGGAAGATCACTGGATTCTGTGGTGGAAAAAGCTGCTGCCTGAGCTCTGCCAGAGAGTCAAGAGTGGTGG
CGAGAGGTCCCACCTTCACCTGTCATTGTTAAAAGAAACCTTGTCGGTTATTGCTGTGGGACTGGACCTG
AGGGATTTCTTGAATGTTCTCCCAGAAGATGGGGCAGCAGCATTTTTCCTGCCCTACCTCCTTTTCTGCA
GCCGGAAGAAATCACTAACTTGA

Translation (870 aa):
MVRLYNLHPFGSQQVVPCQWEPEQVCCGGSDALFVAAGCKVEAFAVQGEELCRQRCAFSTLGRVLRMAYS
EAEVLLLKLESDPIHGESVDHHPQETSNPLKEAEGVSNETSQLESEDFVICLKPMELIGEKCEQSGISVK
LESTGLEDEKVKYLRVRHLLYRRFAPDISSYVLSDNIKLHSLQLLPIHQSGFHPDENDLSPKKEMPNLFC
FFSLPHVGYLYMVVKSVELMSVYWYPEKSQQAVLTPQFLHVITSQSLQCFTVRCSAAVAHEEDLYMDTTL
KACPPVSMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRESPKKLISRKDASVRSGTPHVAEA
AWNLYLVNTTAPVQLYKEMVDYSNSYKTVKTESCLHLLSEAHLLVRAALMDGSQLEPAEKAELLEAFKES
CGHLGDCYSRLTTEQSHLALPYYKMSGLSLAEVLARVDWTEESESQKYERGLVFYINHSLYENLDEELSK
ELAAKVAQIFHMAEPKQLPHVLSSPSMKNIDPLTALHYLRKLDSCGVSPVLVTLTKAAVALKMGDLDMYR
NEMKSHSEMKLVYGFILEPRLLIQQWKGQIVPTELAIDLKETQPGLLVASVLGLQKNDKIGIVETDSFFK
VLCGKDEDAVPQLLIDFWEAQLVACLPNVVLEELFFKLISQYVWRLSERRCPDTVPLRTAEDLINACSHY
GLVNPWVHVLTTSDSLADKNYTDDLLKLQSLICSPSLDVASIIPFLEPLSEDTVAGLSTHALCHTRLQEY
EQCIDTLLERCPEAVIAYANQELKEDHWILWWKKLLPELCQRVKSGGERSHLHLSLLKETLSVIAVGLDL
RDFLNVLPEDGAAAFFLPYLLFCSRKKSLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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