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Report for CCDS50856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50856.1 Public Mus musculus 2 Myt1 23 108 98 CCDS HistoryNCBI Gene:17932Re-query CCDS DB by CCDS ID:50856.1Re-query CCDS DB by GeneID:17932See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081125.10 ENSMUSP00000079900.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081125.10Link to Ensembl Protein Viewer:ENSMUSP00000079900.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000081125Re-query CCDS DB by Protein ID:ENSMUSP00000079900
Original member NCBI NM_001171615.1 NP_001165086.1 Updated not alive Link to Nucleotide Sequence:NM_001171615.1Link to Protein Sequence:NP_001165086.1Re-query CCDS DB by Nucleotide ID:NM_001171615Re-query CCDS DB by Protein ID:NP_001165086
Current member NCBI NM_001171615.2 NP_001165086.1 Accepted alive Link to Nucleotide Sequence:NM_001171615.2Link to Protein Sequence:NP_001165086.1Re-query CCDS DB by Nucleotide ID:NM_001171615Re-query CCDS DB by Protein ID:NP_001165086Link to BLAST:NP_001165086.1

Chromosomal Locations for CCDS 50856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181763396 181763420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181782541 181782641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181789522 181789576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181790549 181790579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181794766 181794828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181795647 181795894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181797084 181797983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181801017 181801151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181801815 181801905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181802916 181803029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181804927 181805141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181806516 181806640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181807391 181807660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181810245 181810399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181811165 181811227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181811355 181811423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181815049 181815111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181815530 181815613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181820007 181820228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181821932 181822023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181822656 181822759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181825398 181825541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181825904 181826044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3510 nt):
ATGACGCTCTGCGGGAGCTTCCTGGAAAATGAGTTCCGGGGCAAACTTCTGACCCAGAGGTGGACACAGG
AAGACAAGACTAGTAGCTGCAGAACTGAGAGACATTTCCTGTGTAGATACAACAAGATGAGCTCAGAAAG
TGATGACAAGCGAGCCCGCACACGGTCCAAGACCCTCCGAGGACCCCCAGAGACCACAGGTGCAGACCTC
AGTTGTCCTACCCCAGGATGTACTGGTTCAGGACATGTGCGGGGCAAGTACTCCAGACATCGAAGCTTAC
AGAGTTGCCCTCTGGCCAAGAAGAGAAAACTGGAGGATGCTGAGACTGAGCACCTGGTATCCAAGAGGAA
GTCACACCCTCTGAGGCTGGCTCTGGATGAGGGTTACCGCATGGACAGTGATGGCAGTGAGGATGCTGAA
GTGAAGGACGTCTCTGTTTCAGATGAATCAGAAGGACCCCTGGAGGAGGCTGAGGCTGAGATGTCAGGAC
AGGAGGAGATTCATCACCCACAGACAGCTGAAGGAAAAAGCCTCATCAAGCCCCATTTTGACTCCAACCC
CACAAGCAGCCCTTCTGGCTTCTCCAAGAGCAGCTACAGTAGCTACCAGGGGATCATTGCAACTTCCCTC
CTAAATCTGGGCCAAATTGCTGAAGAGGCCCTTGTGAAGGAGGATTCCGTCTCAGTAGCTAAGTTGAGCC
CCACTGTTGTTCATCAGCTTCAGGATGAGGCTGCAATGGGGGTCAACAGTGACGAGGGTGAAAAGGACCT
CTTTATACAGCCAGAAGATGTGGAGGAGGTCATTGAAGTCACAAGTGAACGTTCCCAGGAGCCATGCCCC
CAGTCTCTGAAGGATATGGTTAGTGAAGAGTCAAGTAAGCAGAAAGGAGTCCTAGGTCATGAGGAGGAGG
GAGAGGAGGAGGAAGAAGATGAAGAAGAAGAGGATGAGGAGGAGGAGGAGGAGGGAGAGGAAGGAGAAGA
AGAAGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAAGATGAAGAGGAAGAGGAGGAGGAGGAGGAAGCA
GCTCCAAATGTTATCTTTGGGGAAGACACCTCCCATACCTCTGTCCAGAAGGCGTCTCCTGAGTTCCGAG
GCCCAGAGCTATCTAGTCCTAAACCTGAGTACTCAGTCATCGTGGAGGTTCGCTCTGATGATGACAAGGA
TGAGGATTCACGCTCCCAGAAGTCAGCAGTCACAGATGAATCAGAAATGTATGACATGATGACCCGTGGG
AATTTAGGCCTTCTGGAACAGGCCATTGCCCTGAAGGCTGAGCAGGTGCGAGCGGTCTGTGAGTCTGGCT
GTCCACCTGCTGAGCAGGGCCATCTGGGCCCAGGAGAGCCAGGGAAAATGGCAAAGCCCCTGGACGTGGT
GAGGAAGAGCTGCTACAGCAAAGATCCTTCCAGGGTGGAGAAGCGTGAAATCAAGTGTCCGACACCTGGC
TGTGATGGCACTGGCCATGTTACTGGATTGTACCCTCATCACCGCAGCCTGTCTGGCTGTCCCCACAAGG
ATAGAATCCCTCCAGAGATCTTGGCCATGCATGAAAATGTACTGAAGTGCCCTACTCCTGGCTGCACGGG
CCAAGGCCATGTGAACAGCAACCGCAATACTCACAGAAGTTTATCTGGATGTCCCATTGCTGCTGCTGAA
AAATTAGCCAAATCTCATGAGAAGCAGCAATTGCAGACAGGAGATCCTCCCAAAAATAACTCCAATTCAG
ATCGGATCCTCAGGCCCATGTGTTTTGTGAAGCAGCTTGAGGTTCCACCTTATGGGAGCTACAGACCCAA
TGTGGCTCCCGCCACGCCCAGGGCCAACTTGGCCAAGGAGCTGGAGAAGTTCTCCAAAGTCACCTTTGAC
TACGCAAGTTTTGATGCTCAGGTTTTTGGCAAACGTATGCTTGCCCCAAAGATTCAGACCAGCGAAACCT
CACCCAAAGCCTTCCAATGCTTCGATTACTCTCATGATGCTGAGGCTGCACACATGGCTGCCACAGCCAT
CCTGAACCTCTCCACTCGATGTTGGGAGATGCCAGAGAACCTCAGCACAAAGCCACAGGACCTCCCCAGC
AAGGCTGTGGACATTGAGGTAGATGAAAATGGAACTCTGGACTTGAGCATGCATAAACATCGCAAGCGGG
AAAACACTTTCCCCAGCAGTAGCAGCTGCAGTAGCAGCCCTGGTGTCAAGTCTCCTGATGTCTCTCAACG
TCAGAGCAGTACCAGTGCCCCCAGCAGCTCTATGACCTCACCCCAGTCCAGCCAGGCCTCTCGCCAGGAT
GAGTGGGACCGTCCTCTAGACTACACCAAACCTAGTCGGCTTCGAGAGGAAGAGCCTGAGGAGTCAGAGC
CAGCAGCACACTCTTTTGCTTCTTCTGAAGCAGATGATCAGGAGGTGTCAGAAGAGAACTTTGAGGAGCG
GAAGTATCCAGGGGAAGTCACCCTAACCAACTTTAAGCTGAAGTTTCTTTCCAAGGACATAAAGAAGGAA
CTTCTCACCTGTCCCACCCCCGGCTGTGACGGCAGTGGCCATATCACCGGGAACTATGCCTCCCATCGCA
GCCTCTCTGGTTGCCCTCTTGCTGACAAGAGCCTCAGAAACCTCATGGCTGCCCACTCTGCTGACCTCAA
GTGCCCCACACCTGGCTGTGATGGCTCTGGCCACATAACAGGGAACTATGCTTCACACCGGAGTTTGTCA
GGCTGCCCACGTGCCAAGAAGAGTGGACTCAAGGTGGCGCCTACCAAGGATGACAAGGAGGACCCCGAGT
TGATGAAGTGCCCAGTTCCAGGCTGTGTGGGGCTCGGCCACATCAGCGGCAAATATGCCTCTCACAGGAG
TGCTTCTGGCTGCCCACTGGCTGCTCGGAGGCAGAAAGAGGGAGCTCTCAATGGTTCATCTTTCTCGTGG
AAGTCGCTGAAGAATGAGGGCCCTACTTGCCCCACCCCAGGTTGCGACGGCTCTGGCCATGCCAACGGCA
GTTTCCTCACCCACCGAAGTTTGTCTGGCTGTCCCAGAGCAACCTTTGCTGGAAAGAAAGGAAAACTCTC
AGGGGATGAGATTCTCAGCCCAAAGTTCAAGACAAGTGATGTGCTGGAGAATGATGAGGAGATCAAGCAG
CTAAATCAGGAGATACGAGACTTAAATGAGTCCAATTCGGAAATGGAGGCTGCCATGGTGCAGCTGCAGT
CTCAGATCTCGTCCATGGAGAAGAACCTGAAGAACATCGAGGAGGAGAACAAGCTCATTGAGGAGCAGAA
TGAGGCCCTGTTTCTGGAATTGTCCGGGCTTAGCCAAGCCCTCATCCAAAGTCTTGCCAATATTCGCCTT
CCACACATGGAACCAATATGTGAACAGAATTTTGACGCCTATGTGAACACCCTCACTGACATGTACTCCA
ATCAGGACTGCTACCAGAATCCGGAGAACAAAGGCCTTCTGGAAACGATCAAGCAAGCTGTGAGGGGCAT
TCAGGTCTAG

Translation (1169 aa):
MTLCGSFLENEFRGKLLTQRWTQEDKTSSCRTERHFLCRYNKMSSESDDKRARTRSKTLRGPPETTGADL
SCPTPGCTGSGHVRGKYSRHRSLQSCPLAKKRKLEDAETEHLVSKRKSHPLRLALDEGYRMDSDGSEDAE
VKDVSVSDESEGPLEEAEAEMSGQEEIHHPQTAEGKSLIKPHFDSNPTSSPSGFSKSSYSSYQGIIATSL
LNLGQIAEEALVKEDSVSVAKLSPTVVHQLQDEAAMGVNSDEGEKDLFIQPEDVEEVIEVTSERSQEPCP
QSLKDMVSEESSKQKGVLGHEEEGEEEEEDEEEEDEEEEEEGEEGEEEEEEEEEEEEEEDEEEEEEEEEA
APNVIFGEDTSHTSVQKASPEFRGPELSSPKPEYSVIVEVRSDDDKDEDSRSQKSAVTDESEMYDMMTRG
NLGLLEQAIALKAEQVRAVCESGCPPAEQGHLGPGEPGKMAKPLDVVRKSCYSKDPSRVEKREIKCPTPG
CDGTGHVTGLYPHHRSLSGCPHKDRIPPEILAMHENVLKCPTPGCTGQGHVNSNRNTHRSLSGCPIAAAE
KLAKSHEKQQLQTGDPPKNNSNSDRILRPMCFVKQLEVPPYGSYRPNVAPATPRANLAKELEKFSKVTFD
YASFDAQVFGKRMLAPKIQTSETSPKAFQCFDYSHDAEAAHMAATAILNLSTRCWEMPENLSTKPQDLPS
KAVDIEVDENGTLDLSMHKHRKRENTFPSSSSCSSSPGVKSPDVSQRQSSTSAPSSSMTSPQSSQASRQD
EWDRPLDYTKPSRLREEEPEESEPAAHSFASSEADDQEVSEENFEERKYPGEVTLTNFKLKFLSKDIKKE
LLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSLS
GCPRAKKSGLKVAPTKDDKEDPELMKCPVPGCVGLGHISGKYASHRSASGCPLAARRQKEGALNGSSFSW
KSLKNEGPTCPTPGCDGSGHANGSFLTHRSLSGCPRATFAGKKGKLSGDEILSPKFKTSDVLENDEEIKQ
LNQEIRDLNESNSEMEAAMVQLQSQISSMEKNLKNIEEENKLIEEQNEALFLELSGLSQALIQSLANIRL
PHMEPICEQNFDAYVNTLTDMYSNQDCYQNPENKGLLETIKQAVRGIQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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