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Report for CCDS50573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50573.1 Public Mus musculus 2 Fbxw2 23 108 98 CCDS HistoryNCBI Gene:30050Re-query CCDS DB by CCDS ID:50573.1Re-query CCDS DB by GeneID:30050See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091020.9 ENSMUSP00000088541.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091020.9Link to Ensembl Protein Viewer:ENSMUSP00000088541.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000091020Re-query CCDS DB by Protein ID:ENSMUSP00000088541
Original member NCBI NM_001164770.1 NP_001158242.1 Updated not alive Link to Nucleotide Sequence:NM_001164770.1Link to Protein Sequence:NP_001158242.1Re-query CCDS DB by Nucleotide ID:NM_001164770Re-query CCDS DB by Protein ID:NP_001158242
Current member NCBI NM_001164770.2 NP_001158242.1 Accepted alive Link to Nucleotide Sequence:NM_001164770.2Link to Protein Sequence:NP_001158242.1Re-query CCDS DB by Nucleotide ID:NM_001164770Re-query CCDS DB by Protein ID:NP_001158242Link to BLAST:NP_001158242.1

Chromosomal Locations for CCDS 50573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 34805711 34805999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34807278 34807447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34808514 34808600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34810983 34811116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34812815 34813009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34822558 34822660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCTTCGTTAATTGGACATAGTGCCAGAGTGTATG
CA
CTTTACTACAAAGATGGACTTCTCTGTACAGGGTCAGATGACTTGTCTGCAAAGCTGTGGGATGTAAG
C
ACAGGGCAGTGTGTTTACGGCATCCAGACCCACACTTGTGCAGCTGTGAAGTTCGATGAACAGAAGCTT
GTG
ACAGGCTCCTTTGACAACACTGTGGCCTGCTGGGAGTGGAGTTCCGGAGCCAGGACCCAGCACTTCC
GG
GGGCACACGGGGGCGGTGTTCAGTGTGGACTACAGTGATGAACTGGATATTTTGGTGAGTGGCTCTGC
G
GACTTCGCTGTGAAAGTATGGGCTTTATCTGCTGGGACATGCCTGAATACACTCACTGGGCATACTGAA
TGG
GTCACCAAGGTGGTTTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGCCCTGGAGACTACATCC
TC
TTAAGTGCAGACAAATATGAGATCAAGATTTGGCCAATTGGGAGAGAAATCAACTGTAAGTGCTTGAA
G
ACACTGTCTGTCTCTGAGGATAGAAGTATCTGCCTGCAGCCAAGACTTCATTTTGATGGAAAATACATT
GTC
TGTAGTTCAGCCCTGGGTCTGTACCAGTGGGACTTTGCCAGTTATGATATTCTCAGGGTCATCAAGA
CA
CCTGAGGTAGCAAACTTGGCCTTGCTTGGCTTTGGAGATGTCTTCGCCCTGCTGTTTGACAACCACTA
C
CTATATATCATGGACTTGAGGACAGAGAGCCTAATTAGCCGCTGGCCTCTGCCAGAGTACAGGAAATCA
AAG
AGAGGCTCCAGCTTCCTGGCAGGCGAAGCGTCCTGGTTGAATGGATTGGATGGGCACAATGACACGG
GC
TTAGTCTTTGCCACCAGCATGCCTGACCACAGTATTCACCTGGTGTTATGGAAGGAGCATTGCTGA


Translation (325 aa):
MKQLEDHEAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAVKFDEQKL
V
TGSFDNTVACWEWSSGARTQHFRGHTGA
VFSVDYSDELDILVSGSADFAVKVWALSAGTCLNTLTGHTE
W
VTK
VVLQKCKVKSLLHSPGDYILLSADKYEIKIWPIGREINCKCLKTLSVSEDRSICLQPRLHFDGKYI
V
CSSALGLYQWDFASYDIL
RVIKTPEVANLALLGFGDVFALLFDNHYLYIMDLRTESLISRWPLPEYRKS
K
RGSSFLAGEASWLNGLDGHNDTGLVFATSMPDHSIHLVLWKEHC




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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