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Report for CCDS50568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50568.1 Public Mus musculus 2 Slc25a25 23 108 98 CCDS HistoryNCBI Gene:227731Re-query CCDS DB by CCDS ID:50568.1Re-query CCDS DB by GeneID:227731See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50568.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113310.8 ENSMUSP00000108936.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113310.8Link to Ensembl Protein Viewer:ENSMUSP00000108936.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113310Re-query CCDS DB by Protein ID:ENSMUSP00000108936
Original member Current member NCBI NM_001164357.1 NP_001157829.1 Accepted alive Link to Nucleotide Sequence:NM_001164357.1Link to Protein Sequence:NP_001157829.1Re-query CCDS DB by Nucleotide ID:NM_001164357Re-query CCDS DB by Protein ID:NP_001157829Link to BLAST:NP_001157829.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157829.1 502 A2ASZ8-2 502 100% 0 0

Chromosomal Locations for CCDS 50568.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32416138 32416322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32416409 32416559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417092 32417259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417346 32417453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417724 32417876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32419048 32419206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32420305 32420416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32421303 32421390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32421473 32421599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32451067 32451324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGGTGAGCAGTGTGTTGTGCCGCTGCGTGGCCTCCCCGCCGCCGGACGCCGCCGCCACCGCCTCGTCGT
CCGCCTCGTCGCCGGCTTCTGTAGGGGACCCGTGCGGCGGCGCCGTCTGTGGCGGCCCGGACCACCAGCT
ACGCCTGTGGAGCCTCTTCCAGACACTCGACGTCAACCGCGACGGCGGCCTGTGTGTCAACGACCTGGCG
GTGGGGCTGCGGCGCCTGGGACTGCACCGCACGGAGGGCGAGCTCCGGAAAATTGTGCAAGCAGGTGACA
AGGACCTTGATGGGCAACTGGACTTTGAAGAGTTTGTACATTACCTCCAAGATCATGAGAAAAAACTGAG
GCTGGTGTTCAAGAGTCTGGACAAAAAGAATGATGGTCGAATCGATGCTCAGGAGATCATGCAGTCCCTG
CGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAGAAGATTCTTAAGAGCATGGATAAGAATGGCA
CGATGACCATCGACTGGAACGAGTGGAGGGACTACCACCTCCTGCACCCTGTGGAGAACATCCCGGAGAT
CATCCTGTACTGGAAGCACTCGACGATCTTCGATGTCGGTGAGAATCTGACAGTCCCAGATGAGTTCACA
GTGGAGGAGAGGCAGACGGGGATGTGGTGGAGGCACCTGGTGGCAGGAGGTGGGGCAGGGGCAGTTTCCA
GAACCTGCACTGCCCCCCTGGACAGACTGAAGGTGCTCATGCAGGTCCATGCCTCCCGCAGCAACAACAT
GTGCATCGTAGGTGGATTCACACAGATGATTCGAGAAGGGGGAGCCAAGTCACTCTGGCGGGGCAACGGC
ATCAATGTCCTCAAAATTGCCCCTGAGTCGGCCATCAAATTCATGGCATATGAGCAGATGAAACGGCTTG
TCGGTAGTGATCAGGAGACGCTGAGGATCCACGAAAGGCTTGTGGCAGGCTCCTTGGCCGGAGCCATTGC
CCAGAGTAGCATCTACCCAATGGAGGTTCTGAAGACCCGAATGGCCCTGCGGAAAACAGGACAGTACTCC
GGCATGCTGGACTGTGCCAGGAGGATCTTGGCTAAAGAGGGTGTAGCTGCCTTCTACAAAGGCTACATCC
CCAACATGCTGGGGATCATCCCCTATGCTGGCATCGACCTAGCTGTCTATGAGACATTGAAAAATACCTG
GCTCCAGCGCTACGCAGTAAACAGTGCAGACCCCGGTGTGTTCGTGCTCCTGGCCTGTGGTACTATCTCC
AGTACTTGTGGCCAGCTGGCCAGCTACCCACTAGCCCTGGTCAGGACCCGGATGCAGGCACAAGCCTCCA
TTGAGGGCGCACCTGAGGTAACCATGAGCAGCCTCTTCAAACAGATTCTGCGGACTGAGGGGGCCTTTGG
GCTCTACCGGGGGCTGGCCCCCAACTTCATGAAGGTGATCCCGGCTGTGAGCATCAGCTACGTGGTCTAC
GAAAACCTGAAGATCACCCTGGGCGTGCAGTCTCGGTGA

Translation (502 aa):
MVSSVLCRCVASPPPDAAATASSSASSPASVGDPCGGAVCGGPDHQLRLWSLFQTLDVNRDGGLCVNDLA
VGLRRLGLHRTEGELRKIVQAGDKDLDGQLDFEEFVHYLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSL
RDLGVKISEQQAEKILKSMDKNGTMTIDWNEWRDYHLLHPVENIPEIILYWKHSTIFDVGENLTVPDEFT
VEERQTGMWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQVHASRSNNMCIVGGFTQMIREGGAKSLWRGNG
INVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYS
GMLDCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTIS
STCGQLASYPLALVRTRMQAQASIEGAPEVTMSSLFKQILRTEGAFGLYRGLAPNFMKVIPAVSISYVVY
ENLKITLGVQSR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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