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Report for CCDS50567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50567.1 Public Mus musculus 2 Slc25a25 23 108 98 CCDS HistoryNCBI Gene:227731Re-query CCDS DB by CCDS ID:50567.1Re-query CCDS DB by GeneID:227731See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052119.13 ENSMUSP00000060581.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052119.13Link to Ensembl Protein Viewer:ENSMUSP00000060581.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052119Re-query CCDS DB by Protein ID:ENSMUSP00000060581
Original member Current member NCBI NM_001164358.1 NP_001157830.1 Accepted alive Link to Nucleotide Sequence:NM_001164358.1Link to Protein Sequence:NP_001157830.1Re-query CCDS DB by Nucleotide ID:NM_001164358Re-query CCDS DB by Protein ID:NP_001157830Link to BLAST:NP_001157830.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157830.1 501 A2ASZ8-5 501 100% 0 0

Chromosomal Locations for CCDS 50567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32416138 32416322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32416409 32416559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417092 32417259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417346 32417453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417724 32417876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32419048 32419206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32420305 32420416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32420656 32420691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32421303 32421390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32421473 32421599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32430529 32430747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGCTACAGACACTGTGGCACTTTCTGTCTAGCTTTCTCCCTAGAGCTGAGTGCCAGGACTCCAGAGAGG
GCATCGACCATGGAGTCAGAGGTACTCAGGCCCCTGCTCGGGGAGACCAGATGTCCACCTTTTTGGGGAA
ACAAAACGGAAGGGCTGAGGCCACGGAAAAGAGACCCACCATCTTGCTGGTGGTCGGACCTGCAGAACAG
TTTCCTAAGAAAATTGTGCAAGCAGGTGACAAGGACCTTGATGGGCAACTGGACTTTGAAGAGTTTGTAC
ATTACCTCCAAGATCATGAGAAAAAACTGAGGCTGGTGTTCAAGAGTCTGGACAAAAAGAATGATGGTCG
AATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAG
AAGATTCTTAAGAGAATACGGACGGGCCACTTCTGGGGCCCTGTCACCTACATGGATAAGAATGGCACGA
TGACCATCGACTGGAACGAGTGGAGGGACTACCACCTCCTGCACCCTGTGGAGAACATCCCGGAGATCAT
CCTGTACTGGAAGCACTCGACGATCTTCGATGTCGGTGAGAATCTGACAGTCCCAGATGAGTTCACAGTG
GAGGAGAGGCAGACGGGGATGTGGTGGAGGCACCTGGTGGCAGGAGGTGGGGCAGGGGCAGTTTCCAGAA
CCTGCACTGCCCCCCTGGACAGACTGAAGGTGCTCATGCAGGTCCATGCCTCCCGCAGCAACAACATGTG
CATCGTAGGTGGATTCACACAGATGATTCGAGAAGGGGGAGCCAAGTCACTCTGGCGGGGCAACGGCATC
AATGTCCTCAAAATTGCCCCTGAGTCGGCCATCAAATTCATGGCATATGAGCAGATGAAACGGCTTGTCG
GTAGTGATCAGGAGACGCTGAGGATCCACGAAAGGCTTGTGGCAGGCTCCTTGGCCGGAGCCATTGCCCA
GAGTAGCATCTACCCAATGGAGGTTCTGAAGACCCGAATGGCCCTGCGGAAAACAGGACAGTACTCCGGC
ATGCTGGACTGTGCCAGGAGGATCTTGGCTAAAGAGGGTGTAGCTGCCTTCTACAAAGGCTACATCCCCA
ACATGCTGGGGATCATCCCCTATGCTGGCATCGACCTAGCTGTCTATGAGACATTGAAAAATACCTGGCT
CCAGCGCTACGCAGTAAACAGTGCAGACCCCGGTGTGTTCGTGCTCCTGGCCTGTGGTACTATCTCCAGT
ACTTGTGGCCAGCTGGCCAGCTACCCACTAGCCCTGGTCAGGACCCGGATGCAGGCACAAGCCTCCATTG
AGGGCGCACCTGAGGTAACCATGAGCAGCCTCTTCAAACAGATTCTGCGGACTGAGGGGGCCTTTGGGCT
CTACCGGGGGCTGGCCCCCAACTTCATGAAGGTGATCCCGGCTGTGAGCATCAGCTACGTGGTCTACGAA
AACCTGAAGATCACCCTGGGCGTGCAGTCTCGGTGA

Translation (501 aa):
MLQTLWHFLSSFLPRAECQDSREGIDHGVRGTQAPARGDQMSTFLGKQNGRAEATEKRPTILLVVGPAEQ
FPKKIVQAGDKDLDGQLDFEEFVHYLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVKISEQQAE
KILKRIRTGHFWGPVTYMDKNGTMTIDWNEWRDYHLLHPVENIPEIILYWKHSTIFDVGENLTVPDEFTV
EERQTGMWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQVHASRSNNMCIVGGFTQMIREGGAKSLWRGNGI
NVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSG
MLDCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISS
TCGQLASYPLALVRTRMQAQASIEGAPEVTMSSLFKQILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYE
NLKITLGVQSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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