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Report for CCDS49659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49659.1 Public Mus musculus 15 Rbfox2 23 108 98 CCDS HistoryNCBI Gene:93686Re-query CCDS DB by CCDS ID:49659.1Re-query CCDS DB by GeneID:93686See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171751.9 ENSMUSP00000130739.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171751.9Link to Ensembl Protein Viewer:ENSMUSP00000130739.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171751Re-query CCDS DB by Protein ID:ENSMUSP00000130739
Original member NCBI NM_053104.6 NP_444334.3 Updated not alive Link to Nucleotide Sequence:NM_053104.6Link to Protein Sequence:NP_444334.3Re-query CCDS DB by Nucleotide ID:NM_053104Re-query CCDS DB by Protein ID:NP_444334
Current member NCBI NM_053104.7 NP_444334.3 Accepted alive Link to Nucleotide Sequence:NM_053104.7Link to Protein Sequence:NP_444334.3Re-query CCDS DB by Nucleotide ID:NM_053104Re-query CCDS DB by Protein ID:NP_444334Link to BLAST:NP_444334.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444334.3 449 Q8BP71-1 449 100% 0 0

Chromosomal Locations for CCDS 49659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77084162 77084206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77085578 77085650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77086067 77086155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77094451 77094490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77097940 77098084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77099240 77099332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77099439 77099492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77102879 77102939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77105577 77105669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77113605 77113658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77116921 77117067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77132717 77132941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77231387 77231437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77306364 77306543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGCGGAAGGCGGCCAGGCGCAGCAGCAGCCGCCTCAGCTCGGGCCCGGCGCTGCCGCCCGGGGCATGA
AGCGGGAGTCGGAGGTGGAGTTGCCGGTGCCCGGAGCGGGGGCAGACGGACCCGAGCCCGGCCTGAGCAA
GCGGCCACGCACAGAGGAGGCGGCCGACGGCGGGATGCAGAACGAGCCACTGACCCCGGGTTATCATGGA
TTCCCAGCAAGGGATGGCCAGGGTAACCAGGAGCCAACAACAACTCCTGACGCAATGGTTCAGCCTTTTA
CTACCATCCCGTTCCCACCACCTCCACAAAATGGAATTCCCACAGAATATGGAGTGCCACACACTCAGGA
CTATGCCGGCCAGACCAGTGAACATAACCTGACCCTCTACGGGAGTACGCAGCCTCATGGAGAACAGAGT
AGCAATTCACCCAGCAACCAGAATGGATCTCTCACGCAGACAGAAGGTGGAGCACAGACAGACGGACAAC
AGTCACAGACACAAAGTAGTGAAAATTCAGAGAGTAAATCTACGCCCAAGCGACTACATGTCTCTAATAT
TCCCTTCCGCTTCCGAGACCCTGACCTCCGGCAGATGTTTGGGCAGTTTGGCAAAATCCTAGATGTGGAA
ATAATCTTTAATGAGCGCGGCTCCAAGGGATTCGGGTTCGTAACTTTCGAGAATAGTGCTGATGCAGACA
GGGCCAGGGAGAAATTGCACGGCACCGTGGTAGAGGGCCGTAAAATCGAGGTGAATAATGCAACAGCACG
GGTCATGACCAACAAGAAGATGGTCACGCCATATGCAAATGGCTGGAAGTTAAGCCCAGTAGTTGGAGCT
GTGTATGGTCCTGAGTTATATGCAGCATCCAGCTTTCAAGCTGATGTGTCCCTAGGCAATGAGGCGGCTG
TGCCCTTGTCAGGAAGAGGAGGCATCAACACTTACATCCCTCTAATCAGTCTCCCTTTAGTTCCTGGCTT
CCCTTACCCAACTGCAGCCACCACGGCAGCTGCTTTCCGAGGAGCCCATCTGAGGGGCAGAGGGCGGACA
GTGTATGGTGCAGTCCGAGCGGTACCTCCAACAGCCATCCCCGCCTATCCAGGTGTGGTTTACCAGGACG
GATTTTACGGTGCTGACCTCTATGGTGGATATGCAGCCTACAGATATGCACAGCCTGCTACTGCAACCGC
AGCCACAGCTGCTGCAGCCGCTGCAGCCGCTTACAGCGACGGTTACGGCAGGGTGTACACAGCTGACCCC
TACCATGCCCTCGCCCCTGCCGCCAGCTATGGAGTTGGCGCTGTGGCGAGTTTGTACCGAGGTGGCTACA
GCCGATTTGCCCCCTACTGA

Translation (449 aa):
MAEGGQAQQQPPQLGPGAAARGMKRESEVELPVPGAGADGPEPGLSKRPRTEEAADGGMQNEPLTPGYHG
FPARDGQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTSEHNLTLYGSTQPHGEQS
SNSPSNQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE
IIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGA
VYGPELYAASSFQADVSLGNEAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRT
VYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADP
YHALAPAASYGVGAVASLYRGGYSRFAPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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