NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49640.1 Public Mus musculus 15 Ly6h 23 108 98 CCDS HistoryNCBI Gene:23934Re-query CCDS DB by CCDS ID:49640.1Re-query CCDS DB by GeneID:23934See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023241.11 ENSMUSP00000023241.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023241.11Link to Ensembl Protein Viewer:ENSMUSP00000023241.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023241Re-query CCDS DB by Protein ID:ENSMUSP00000023241
Original member Current member EBI ENSMUST00000065417.14 ENSMUSP00000070646.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065417.14Link to Ensembl Protein Viewer:ENSMUSP00000070646.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000065417Re-query CCDS DB by Protein ID:ENSMUSP00000070646
Original member Current member EBI ENSMUST00000126129.7 ENSMUSP00000121951.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126129.7Link to Ensembl Protein Viewer:ENSMUSP00000121951.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126129Re-query CCDS DB by Protein ID:ENSMUSP00000121951
Original member Current member EBI ENSMUST00000163116.7 ENSMUSP00000130781.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163116.7Link to Ensembl Protein Viewer:ENSMUSP00000130781.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163116Re-query CCDS DB by Protein ID:ENSMUSP00000130781
Original member NCBI NM_001135688.1 NP_001129160.1 Updated not alive Link to Nucleotide Sequence:NM_001135688.1Link to Protein Sequence:NP_001129160.1Re-query CCDS DB by Nucleotide ID:NM_001135688Re-query CCDS DB by Protein ID:NP_001129160
Current member NCBI NM_001135688.2 NP_001129160.1 Accepted alive Link to Nucleotide Sequence:NM_001135688.2Link to Protein Sequence:NP_001129160.1Re-query CCDS DB by Nucleotide ID:NM_001135688Re-query CCDS DB by Protein ID:NP_001129160Link to BLAST:NP_001129160.1
Original member NCBI NM_001135689.1 NP_001129161.1 Updated not alive Link to Nucleotide Sequence:NM_001135689.1Link to Protein Sequence:NP_001129161.1Re-query CCDS DB by Nucleotide ID:NM_001135689Re-query CCDS DB by Protein ID:NP_001129161
Current member NCBI NM_001135689.2 NP_001129161.1 Accepted alive Link to Nucleotide Sequence:NM_001135689.2Link to Protein Sequence:NP_001129161.1Re-query CCDS DB by Nucleotide ID:NM_001135689Re-query CCDS DB by Protein ID:NP_001129161Link to BLAST:NP_001129161.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129160.1 139 Q9WUC3 139 100% 0 0
NP_001129161.1 139 Q9WUC3 139 100% 0 0

Chromosomal Locations for CCDS 49640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75565106 75565341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75565583 75565699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75566132 75566198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGCTGCCTGCAGCCATGAAGAGCCTCGGTCTGGCGCTGCTGGCCTTGCTTCTCTGCCCCTCGCCGGCCC
ATGGCCTGTGGTGCCAGGACTGCACCCTGGCCAATTCCAGCCATTGCGCTCCGAAGCAGTGCCAGCCCAC
CGATACCGTTTGTGCCAGCGTGCGGATCACCGACCCCAGCAGCAGCAGGAAGGATCATTCTGTGAACAAG
ATGTGTGCTTCCTCCTGCGACTTCGTTAAGCGGCACTTTTTCTCAGACTATCTGATGGGGTTCATTAACT
CTGGGATCTTAAAAGTCGACGTGGACTGCTGCGAGAAAGATTTGTGCAACGGGGCATCGGTCGCAGGACG
CAGCCCCTGGGCCCTGGCTGGGGGGCTCCTGCTCAGCCTGGGGCCTGCTCTTCTCTGGGCTGGGCCCTAA

Translation (139 aa):
MLPAAMKSLGLALLALLLCPSPAHGLWCQDCTLANSSHCAPKQCQPTDTVCASVRITDPSSSRKDHSVNK
MCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGASVAGRSPWALAGGLLLSLGPALLWAGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH