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Report for CCDS49600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49600.1 Public Mus musculus 15 Oxr1 23 108 98 CCDS HistoryNCBI Gene:170719Re-query CCDS DB by CCDS ID:49600.1Re-query CCDS DB by GeneID:170719See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49600.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090095.12 ENSMUSP00000087553.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090095.12Link to Ensembl Protein Viewer:ENSMUSP00000087553.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090095Re-query CCDS DB by Protein ID:ENSMUSP00000087553
Original member Current member EBI ENSMUST00000090096.10 ENSMUSP00000087554.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090096.10Link to Ensembl Protein Viewer:ENSMUSP00000087554.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090096Re-query CCDS DB by Protein ID:ENSMUSP00000087554
Original member Current member EBI ENSMUST00000179393.7 ENSMUSP00000136923.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179393.7Link to Ensembl Protein Viewer:ENSMUSP00000136923.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179393Re-query CCDS DB by Protein ID:ENSMUSP00000136923
Original member Current member NCBI NM_001130163.1 NP_001123635.1 Accepted alive Link to Nucleotide Sequence:NM_001130163.1Link to Protein Sequence:NP_001123635.1Re-query CCDS DB by Nucleotide ID:NM_001130163Re-query CCDS DB by Protein ID:NP_001123635Link to BLAST:NP_001123635.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123635.1 751 Q4KMM3-3 751 100% 0 0

Chromosomal Locations for CCDS 49600.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 41797518 41797556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41800471 41800578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41801582 41801695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41813574 41813726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41817082 41817266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41819839 41820578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41823327 41823495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41825890 41826052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41850459 41850584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41851375 41851527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41853322 41853417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41854921 41854994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41859158 41859293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2256 nt):
ATGTCTTTTCAGAAGCCTAAAGGAACCATTGAATATACTGTTGAATCAAGGGATTCTTTGAATAGCATAG
CCCTGAAATTTGATACCACACCCAATGAACTTGTTCAGTTAAATAAGTTATTCTCTCGAGCAGTCGTGAC
TGGACAGGTTTTATACGTTCCTGATCCTGAATATGTCTCTAGTGTTGAGAGTTCCCCATCCCTCAGCCCT
GTAAGCCCTCTGTCGCCAACGTCATCCGAGGCTGAATTTGATAAAACCACGACTCCAGATGTAGCCCATC
CAAAAGAAGCACCCCCGGCATCGACTGTGAGCGGTATTCGGCCTGCGAGAGTTGTGTCTTCAACTTCTGA
AGAAGAAGAAGCCTTTACTGAGAAATTTCTTAAAATTAATTGCAAATATATCACCATTGGCAAGGGCACA
GTCAGTGGCGTCCTGCTAGTCACACCAAATAACATAATGTTTGATCCACACAAGACAGACCCCTTGGTTC
AAGAGAACGGTTGTGAGGAATACGGCATCATGTGTCCGATGGAAGAGGTGATGTCAGCTGCCATGTACAA
AGAGATTTTGGATAGCAAAATAAAGGAATCACTGCCCATAGAACTAGATCAGTTGTCAGGAAGGGGGTCC
TGCCATTCAAAGAAAGCGACAGGAGTCTCTGCTGAGGACGCAGACCCGAGAGCGCGTGACCAGGGTAACG
ACAGTGCCAGCACTGCTCCCAGGAGCACCGAGGAGTCTCTCTCGGAAGACGCTTTCACAGAGTCAGAACT
CTCTCCTATCCGCGAGGAGCTGCTCTCCTCGGAGCCGAGACAGGAGAAGTCATCTGATGCCTCGTCAGAA
TCTGTGCAGACTGTCAGTCAGATGGAAGTCCAGTCCTTGACAGCCACGTCAGAGGCTGCTAACGTTCCTG
ACCGCACTAGCTCTAACCCTGGGGCTCTATCTCATGAAACTGGCTTAAGTGGTCTGGAAACAGCCACTAA
AGGAGGAGATAAAGCTACAGAAAGCCTTCAAGAAGTCTCAGGCCCAAAGGAACAAAGCACAGAAGTAAAA
GGTCAGGATAACCAGGATTCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGACAGTGTAT
CTTCTGGAGAAACAGTAGAACTGAAAGAAAAACCAGCTGTTCTTAAGGATCAACAAGGGCAGGAGCTAAA
ACGGGACTCAGAGACAGAAGTAGAGGAGCTGCGCAAACTCTGGAAAACTCACTCTATGCAGCAAGCCAAG
CAGCAAAGGGACACGATTCAGCAGGTGTCACAGAGAGAAAGTAAACACAGCAGCGCAGCAGCAGACGCAC
ATGGAGAGGGCTCCTCGCTGTTAAAGGAAAAGCGAAGGCATCGATTACATAAGTTCCTATGTCTCAGAGT
CGGAAAACCAATGAGGAAGACCTTTGTATCGCAAGCAAGTGCTACGATGCAACAGTATGCACAAAGAGAT
AAAAAACACGAATATTGGTTTGCAGTGCCACAAGAAAGGACAGACCACTTGTATGCCTTCTTCATTCAGT
GGAGTCCAGAAATCTATGCAGAAGATTCTGGTGAATACACCAGAGAGCCTGGATTCATAGTAGTCAAAAA
GATGGACGAGTCTGAAGCGAATGAAGCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAGATTACTACA
AGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATCTTTCCGACCAA
ACCTAAGCGACCCCAGTGAACTCTTACTGCCTGATCAGATTGAAAAGCTTACTAAGCACCTTCCACCAAG
AACCATTGGCTATCCATGGACGCTTGTGTACGGTACTGGGAAGCATGGTACAAGTTTGAAGACCCTTTAT
CGAACAATGACAGGTTTAGACACTCCGGTGCTGATGGTGATTAAAGACAGTGATGGACAGGTTTTTGGTG
CATTAGCATCAGAGCCATTTAAAGTAAGTGATGGCTTTTACGGTACTGGAGAAACATTTGTTTTCACATT
CTGCCCAGAATTTGAGGTCTTTAAGTGGACAGGAGATAATATGTTTTTTATCAAAGGAGACATGGATTCA
TTAGCATTTGGTGGTGGAGGAGGGGAATTTGCTCTTTGGCTTGATGGAGATCTCTACCATGGAAGAAGCC
ATTCCTGTAAAACGTTTGGGAATCATACACTTTCTAAGAAGGAAGATTTCTTTATCCAAGACATTGAAAT
CTGGGCTTTTGAATAA

Translation (751 aa):
MSFQKPKGTIEYTVESRDSLNSIALKFDTTPNELVQLNKLFSRAVVTGQVLYVPDPEYVSSVESSPSLSP
VSPLSPTSSEAEFDKTTTPDVAHPKEAPPASTVSGIRPARVVSSTSEEEEAFTEKFLKINCKYITIGKGT
VSGVLLVTPNNIMFDPHKTDPLVQENGCEEYGIMCPMEEVMSAAMYKEILDSKIKESLPIELDQLSGRGS
CHSKKATGVSAEDADPRARDQGNDSASTAPRSTEESLSEDAFTESELSPIREELLSSEPRQEKSSDASSE
SVQTVSQMEVQSLTATSEAANVPDRTSSNPGALSHETGLSGLETATKGGDKATESLQEVSGPKEQSTEVK
GQDNQDSSHQESSLQQEAGEDSVSSGETVELKEKPAVLKDQQGQELKRDSETEVEELRKLWKTHSMQQAK
QQRDTIQQVSQRESKHSSAAADAHGEGSSLLKEKRRHRLHKFLCLRVGKPMRKTFVSQASATMQQYAQRD
KKHEYWFAVPQERTDHLYAFFIQWSPEIYAEDSGEYTREPGFIVVKKMDESEANEAPAGEAAAREWEITT
REDINSKQVAPAKADLEPESFRPNLSDPSELLLPDQIEKLTKHLPPRTIGYPWTLVYGTGKHGTSLKTLY
RTMTGLDTPVLMVIKDSDGQVFGALASEPFKVSDGFYGTGETFVFTFCPEFEVFKWTGDNMFFIKGDMDS
LAFGGGGGEFALWLDGDLYHGRSHSCKTFGNHTLSKKEDFFIQDIEIWAFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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