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Report for CCDS49316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49316.1 Public Mus musculus 13 2210408I21Rik 23 108 98 CCDS HistoryNCBI Gene:72371Re-query CCDS DB by CCDS ID:49316.1Re-query CCDS DB by GeneID:72371See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168779.2 ENSMUSP00000127449.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168779.2Link to Ensembl Protein Viewer:ENSMUSP00000127449.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168779Re-query CCDS DB by Protein ID:ENSMUSP00000127449
Original member NCBI NM_001145676.1 NP_001139148.1 Updated not alive Link to Nucleotide Sequence:NM_001145676.1Link to Protein Sequence:NP_001139148.1Re-query CCDS DB by Nucleotide ID:NM_001145676Re-query CCDS DB by Protein ID:NP_001139148
Current member NCBI NM_001145676.2 NP_001139148.1 Accepted alive Link to Nucleotide Sequence:NM_001145676.2Link to Protein Sequence:NP_001139148.1Re-query CCDS DB by Nucleotide ID:NM_001145676Re-query CCDS DB by Protein ID:NP_001139148Link to BLAST:NP_001139148.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139148.1 1272 Q3UPC7-1 1272 100% 0 0

Chromosomal Locations for CCDS 49316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 77174854 77174984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77183601 77183769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77192554 77193223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77245201 77245362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77254123 77254217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77259841 77260068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77261889 77262154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77263532 77263682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77267662 77267852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77269762 77269944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77281042 77281152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77298467 77298606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77303296 77303460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77316348 77316572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77323365 77323770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77327867 77328023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77332303 77332458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77334269 77334363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77612527 77612644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3819 nt):
ATGGATGCATTACAGGAATATTCCCATAATTCATTTGACCTGCAGTGTCTGTTAAATTCGTTTCCCGGAG
ATTTGGAGTTTAAGCAGATCTTCAGTGACATTGGAGAACAGATGGAGCAAAATGCTGCAAGTATAGAACA
TTGCATTGAAGAAATACAGTCTGAAGTAAACAAGCTCTGTCCAGATGCACAGCTACAAACAACAAGTGAC
TGCTTCAAATGGCTAACTAGTTATAATTATAATTTATCTAAGTCACCATCCATTTCCCATGGAGATTTAA
TAAACTTCCTCAAAACAATGAAAGATTTATTGAATAATGAAGACAACCATGAAGAAATGATTCTGGATTT
ACTCTGGGACCTCTCCTGTCAAAGCAGCATCTCTTTCCTGTCCTCTCTGGGTGGGACAACCTTCTGTCAC
CTGTCCAGGACTTCCATACATTCTGTTGAAGATTTCTCCTCTGTGGATGTCAAGTCTGTTTGGGATGATG
TAAGATTACATCTTCGACGATTCTTAGTAAACAGGTTAGAAAGATATAATGAGATAAACAATTCACAGCA
AAAAATTGAACTGAAAAGTCAATGTATGAAGCAATTCCTCTTGCTCTACTCAGAATCAGAAGTGCTTGTC
AAGTACCAAAGCATCCAGAAGAGACTGCTGGATACATTTCTGCAAGACTCCTTTCCTTCGTGCAACAGAG
AATCAGATTTAGAAAGAATTGTGTGTGGATACCAAAGTACTATGCTCATGTTATATTCAATGATAAAAGA
GGATTTTAATGTACTATGTGAAATTTTAGCTCCATCATCACTGGTGCAGTTCTTTAATGAAACTTACCTG
GATACGGTTACAGAAGAAATGACAAAAATTCTTGAATATTTTTGTGAGCTGCAGTTCAAAGAAAATGCTG
TTCCTGTAGTTAAAACAAGCAAGAGCTGCAACAAGCGCAGAGGAGCAGTGCATGCTTTGGTCAGCCCTGA
ATGCTCACAGAAGGAAAGACGCCCTTCTCTATCCTTAGAAGAACTCAGATTTTTATCACAGCTAACAGAA
TCCTTTGTGAAGCTGGAAAACAGCATTCAGGAGCTGTTTGCAGAAACACTTTCATTGCTTCAGATGCCCA
GGAGTTCTCCAGGAATATTGGAGAAATCTAAGAAGGAAGTCATGGTAGAGAAGCTTATAGCAAATGAAAA
CAATAAACCACCAGAGGCATTATTACCAGTAAAAGAGGCTACTTTACTAGAGTTTGGCTGGAGAAATGCT
TTTAAAGAAGTGCCTCTTGCCATAGCACACTGCATATCTGCAGCCATTGAAGGGTTTTCCACTCAAGTTC
TCCAGCAGGAACAAACTGAAAGGACCTCATCTGTGAGCTACACTATAAACCTTGTAAATGTCCCACAACT
TTGTCCAGAAGGTCACATATTTCCAGAGGAGGAGCAACCAAAGAGAGTTGCCAAGTTTTGTTCTGACATC
ATAGAAAAGCTTGATACAATGCTTCTCCTGGCCCTGGCATGCCGAGATGATTCTCCTCAGGAAATCAAAG
AGAACCTGGTAGAGGCCTACAGTAAAGTGGCAACAGCTGTCCTGGAAAGACTGCAGGAGAGAGGAAAGGA
GGTTCCTTCCCGAGCACCACTGAAGAACCTGCACAGCATCCTGTCCTCAGCAACGTATGTCTCTCAGCGG
TTCACTCACTATGATAATCTGATGAAAGAGACAACTAAGAAACCCATATTCCTGGTGCCTGTCCAGCGCT
ATCAGGAATTCATCAACACTGTCCAGTTTCAGGTTACGGACTACTGCGCCAGAGTTTGTGCTATGAGCAT
TTTACAGGATGCTGAGAGCCACCACTGGGATGACTACAAAGCTTTTTATGAGGGGGAAAGATGCTCCTTC
GCCATCCAGATGTGGCATTACTTCAGCTTGGCTCTGCATCATGATCTCTGGACCATACTGCCCCCTAAGC
TGGCCCAGGAGATTCTAGCAGAGATGCTGGAGAAATCCTTGGGTCTACTTGCCTCCAGATATGCTCGGGC
CCACCCCAGTCCTAAGAGAACTGCACAGATAAGACTTGATGTCATGGCAATCTTAATATTCACTGAGAAC
ATGTTATGGTCCATTTGTTCTTCTGGACAGGAAATTTTGAATCCTCATAAATTTAACAACCATAAAATTT
TTAAAATTCATACTCATTGCAACAATCTCTTTACAACATTAGCAATTTTGACATCACCATTAACCGAATT
ATATAAGACTTTTCAGCATGGTGTCGATGAATCACCTTCAAATTCCTTAACTCCATTGTTTAACCAGCCA
TTACACTGGATTTCATGCATGTCACAGTTCTACCCTTCTCTCCTCAGGCCTCCATCAGTGGGTGGACTGA
CAGCCCAGGGTCAGTTGAAACTGCTCTTATCGCAGCCTTGCTGTAAGTGGAACCTTCTTCTGGACACCCT
GCTTCACAGTGGCGGCCTCATACCGAGAATCCTGTTGAAAAGTTCAAAACAAGCTGCTGGCATGGAGAGT
AAGCAGAGTGCAGGTGGTAGCCTGGTGGGCGCCATCTTTGAAGTTCTGTACCATTGTCATTTGTCCTCAC
AGACATTTGGAAATGTTTTTATGAGTCACATGGAAGAAGAACAACTATGGGACTTTTTATTCAACATTCC
AGTCTCATCGTTCACAGAGTCTCAGCCAGAAGTCATCCACTGTCTGAGACTGGCACTGATGGACTCTGTA
AAGGACACTGTGCAACAGATAATATCCATCATGAGATGTCGGAGAAACAGCGAGACAAACCTAAACAAGC
CCCGTGTTCCTGATCATCTGCTTCAGAGCATTCCACAAGGATGGAATTATATCCCAAGAGATTCCAGAGG
GAAAGAGTCAAATAAAGGCATCACGGAGCTTGCTGCTCAGGCAGTGTCTATTGTCCTCAGCAAGTTACCT
ACAGTGATTGCATGCTTGCCTCCCACAATTAAATACTTCTTTTTTCTGTCTGAGAGAAAAATGTCAAAAA
ATTTGGCTGAATTGAAGAAAGCTGGCCTGCTTGTCTGGAACTTGATTATAATTATATGTCGGATATTTGA
GGATGGGAACACCGTGGAACGTTTAACAGGTTCCTCCCTTGACAGATGGAGTAAGGAGAAACTGGGTTTA
ATTTGCTTGTGTTTGGAAAGTATCCTGGGAAAGCAAAGCAATCCTAGTCAGCTGACCCAAAAGGTCATCC
TGAGCATCGAGCGGCAAAAACCCAACTGGATGGAGCAACAGCTTCTGAAAGCAAGGACACTGAGCATCCA
ATGTGCATTCACGAGGATGGAGGAAAACTCAGGCTCAGAAGGAGAAGCTGCTCTTGAACTGACTGAGCAG
AAAACAAATGCGATGGTCCTGGATCTCTGCCACAAACCAGGTGGCAGCAAGTACCTGCAGCAAATTTATC
ACATCATGCAGCTCAATGAGGAATATTTAAAAGAACAACTGTTTGCTATGAATGGCTCAGAAGAAAAGCC
ATTACTCATCAGACCTTTGAAGGTAGCCTTGAGGGATGAAGATCAGCCTCCTGCTTTTAACCCTTTTCAT
GTGCATAAGGTGGTCAGTGAAAGCATGCTAGATCAGGTGGCCACAGTGACATGGTGCTGCGACTGGTCAA
ACTTGCTGCCAAATTACCTAGGACTGAATAAGATGACCTTCGGTGCACTATTCAAAAACAGGTGGGAAAT
GAGGAAAGATGAAACACTAGAAGAGAAAGAAAAAATGATGCTTGAACATTTAAAACAGAACTGTACCATA
CAGGACTTTTCCACATCAGACAGCAAAACCGAACAGTAA

Translation (1272 aa):
MDALQEYSHNSFDLQCLLNSFPGDLEFKQIFSDIGEQMEQNAASIEHCIEEIQSEVNKLCPDAQLQTTSD
CFKWLTSYNYNLSKSPSISHGDLINFLKTMKDLLNNEDNHEEMILDLLWDLSCQSSISFLSSLGGTTFCH
LSRTSIHSVEDFSSVDVKSVWDDVRLHLRRFLVNRLERYNEINNSQQKIELKSQCMKQFLLLYSESEVLV
KYQSIQKRLLDTFLQDSFPSCNRESDLERIVCGYQSTMLMLYSMIKEDFNVLCEILAPSSLVQFFNETYL
DTVTEEMTKILEYFCELQFKENAVPVVKTSKSCNKRRGAVHALVSPECSQKERRPSLSLEELRFLSQLTE
SFVKLENSIQELFAETLSLLQMPRSSPGILEKSKKEVMVEKLIANENNKPPEALLPVKEATLLEFGWRNA
FKEVPLAIAHCISAAIEGFSTQVLQQEQTERTSSVSYTINLVNVPQLCPEGHIFPEEEQPKRVAKFCSDI
IEKLDTMLLLALACRDDSPQEIKENLVEAYSKVATAVLERLQERGKEVPSRAPLKNLHSILSSATYVSQR
FTHYDNLMKETTKKPIFLVPVQRYQEFINTVQFQVTDYCARVCAMSILQDAESHHWDDYKAFYEGERCSF
AIQMWHYFSLALHHDLWTILPPKLAQEILAEMLEKSLGLLASRYARAHPSPKRTAQIRLDVMAILIFTEN
MLWSICSSGQEILNPHKFNNHKIFKIHTHCNNLFTTLAILTSPLTELYKTFQHGVDESPSNSLTPLFNQP
LHWISCMSQFYPSLLRPPSVGGLTAQGQLKLLLSQPCCKWNLLLDTLLHSGGLIPRILLKSSKQAAGMES
KQSAGGSLVGAIFEVLYHCHLSSQTFGNVFMSHMEEEQLWDFLFNIPVSSFTESQPEVIHCLRLALMDSV
KDTVQQIISIMRCRRNSETNLNKPRVPDHLLQSIPQGWNYIPRDSRGKESNKGITELAAQAVSIVLSKLP
TVIACLPPTIKYFFFLSERKMSKNLAELKKAGLLVWNLIIIICRIFEDGNTVERLTGSSLDRWSKEKLGL
ICLCLESILGKQSNPSQLTQKVILSIERQKPNWMEQQLLKARTLSIQCAFTRMEENSGSEGEAALELTEQ
KTNAMVLDLCHKPGGSKYLQQIYHIMQLNEEYLKEQLFAMNGSEEKPLLIRPLKVALRDEDQPPAFNPFH
VHKVVSESMLDQVATVTWCCDWSNLLPNYLGLNKMTFGALFKNRWEMRKDETLEEKEKMMLEHLKQNCTI
QDFSTSDSKTEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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