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Report for CCDS49252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49252.1 Public Mus musculus 13 Ranbp9 23 108 98 CCDS HistoryNCBI Gene:56705Re-query CCDS DB by CCDS ID:49252.1Re-query CCDS DB by GeneID:56705See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49252.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000144326.3 ENSMUSP00000130636.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144326.3Link to Ensembl Protein Viewer:ENSMUSP00000130636.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144326Re-query CCDS DB by Protein ID:ENSMUSP00000130636
Original member NCBI NM_019930.2 NP_064314.2 Updated not alive Link to Nucleotide Sequence:NM_019930.2Link to Protein Sequence:NP_064314.2Re-query CCDS DB by Nucleotide ID:NM_019930Re-query CCDS DB by Protein ID:NP_064314
Current member NCBI NM_019930.3 NP_064314.2 Accepted alive Link to Nucleotide Sequence:NM_019930.3Link to Protein Sequence:NP_064314.2Re-query CCDS DB by Nucleotide ID:NM_019930Re-query CCDS DB by Protein ID:NP_064314Link to BLAST:NP_064314.2

Chromosomal Locations for CCDS 49252.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 43403559 43403689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43406612 43406723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43412411 43412562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43413983 43414104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43416325 43416469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43419576 43419766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43421211 43421319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43422551 43422663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43425030 43425214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43430448 43430470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43434814 43434981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43436090 43436142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43461712 43461823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43480412 43480928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGTCCGGGCAGCCGCCGCCACCGCCGCCGCAACAGCAGCCGCCGCCGCCGCCGCCCGCCGCCGGGGCCC
CGGGCTCCGGAGTCGCCCTGCCCGCGGCCGCGGCCGCCAGCGCCGGCTCCTCCCCGGCCGGCTCGCCCGG
TGGAGGCTTGGGGGCCGCAGCGGCCGCCCTGCTGCTCCACCCGCCGCCGCCGCCGCCGCCTCCCCCGGCC
ACCGCCGCGCCGCCGCCCCCCGCCTCGGCGGCCGCCCCCGCCACCGCGCCGCCCGGCCTGGCGGTGGGCC
CCGGCCCGGCCGCAGGCGTCCCGGTCCCGGGCCTGGCGGCGGGCAGCAGCGCCGCTGCCCCTTTCCCGCA
CGGCGACTCGGCCCTCAACGAGCAGGAGAAGGAGCTGCAGAGGCGGCTGAAGCGCCTCTACCCGGCTGTG
GATGAGCAGGAGACGCCGCTGCCCCGGTCCTGGAGCCCGAAGGACAAGTTCAGCTACATCGGCCTCTCGC
AGAACAACCTGCGGGTGCACTACAAAGGTCATGGTAAAACCCCCAAAGATGCAGCATCTGTTCGAGCCAC
GCATCCAATACCAGCGGCCTGTGGGATTTATTATTTTGAAGTAAAAATTGTCAGTAAGGGAAGAGATGGC
TACATGGGAATTGGTCTTTCTGCTCAAGGTGTGAACATGAATAGACTACCAGGTTGGGATAAACATTCAT
ATGGTTACCATGGGGATGATGGACATTCATTTTGTTCTTCTGGAACTGGACAACCGTATGGACCAACTTT
TACAACTGGTGATGTCATTGGCTGTTGTGTTAATCTTATCAACAATACCTGCTTTTACACGAAGAATGGA
CATAGTTTAGGTATTGCTTTCACCGACTTACCGCCAAATTTGTATCCTACTGTGGGGCTTCAGACACCAG
GAGAAGTGGTTGATGCCAACTTTGGGCAACATCCTTTTGTGTTTGATATAGAAGACTACATGCGAGAATG
GAGAACCAAAATACAGGCCCAGATAGACCGCTTTCCTATCGGGGATCGAGAAGGAGAATGGCAGACCATG
ATCCAAAAAATGGTTTCATCTTATTTAGTCCACCATGGGTACTGTGCCACAGCAGAGGCCTTTGCCAGAT
CTACAGACCAGACTGTTCTAGAAGAATTAGCTTCCATTAAGAATAGACAAAGAATTCAGAAGTTGGTGTT
AGCAGGACGAATGGGAGAAGCCATTGAAACAACACAACAGTTATACCCAAGTTTACTTGAAAGAAATCCC
AATCTCCTTTTCACATTAAAAGTACGTCAGTTTATAGAAATGGTGAATGGTACAGACAGTGAAGTGCGGT
GTTTGGGAGGCCGAAGTCCAAAATCTCAAGACAGTTATCCCGTCAGTCCTCGACCCTTTAGTAGTCCAAG
CATGAGCCCCAGTCATGGAATGAGTATCCACAGCTTAGCACCAGGCAAAAGCAGCACTGCACATTTTTCT
GGTTTTGAAAGTTGTAGCAATGGTGTAATATCAAATAAAGCACACCAATCATATTGCCATAGTAAACACC
AGCTATCCAGCTTGACTGTACCGGAGCTAAACAGTCTCAATGTATCAAGGTCACAGCAAGTTAATAACTT
TACCAGTAATGATGTAGACATGGAAACAGATCACTACTCCAATGGAGTTGGAGAAACTTCATCCAATGGT
TTCCTAAATGGTAGCTCTAAACATGACCACGAAATGGAAGATTGTGACACCGAAATGGAAGTTGACTGCA
GTCAGTTAAGACGCCAGCTGTGTGGAGGAAGTCAGGCTGCCATAGAGAGGATGATTCACTTTGGCCGAGA
GCTACAAGCCATGAGTGAGCAGCTGAGGAGAGAATGTGGCAAGAACACAGCAAATAAGAAAATGCTGAAG
GACGCATTCAGCTTACTAGCATATTCGGATCCTTGGAATAGTCCAGTTGGAAATCAGCTTGACCCAATTC
AGAGAGAACCTGTGTGCTCAGCTCTTAACAGTGCAATATTAGAAACCCACAATCTGCCAAAGCAACCTCC
ACTTGCCCTAGCCATGGGACAGGCCACACAGTGTCTAGGCCTGATGGCTCGGTCAGGAGTTGGGTCCTGT
GCATTTGCCACAGTGGAAGACTACCTACATTAG

Translation (710 aa):
MSGQPPPPPPQQQPPPPPPAAGAPGSGVALPAAAAASAGSSPAGSPGGGLGAAAAALLLHPPPPPPPPPA
TAAPPPPASAAAPATAPPGLAVGPGPAAGVPVPGLAAGSSAAAPFPHGDSALNEQEKELQRRLKRLYPAV
DEQETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDG
YMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNG
HSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTM
IQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQLYPSLLERNP
NLLFTLKVRQFIEMVNGTDSEVRCLGGRSPKSQDSYPVSPRPFSSPSMSPSHGMSIHSLAPGKSSTAHFS
GFESCSNGVISNKAHQSYCHSKHQLSSLTVPELNSLNVSRSQQVNNFTSNDVDMETDHYSNGVGETSSNG
FLNGSSKHDHEMEDCDTEMEVDCSQLRRQLCGGSQAAIERMIHFGRELQAMSEQLRRECGKNTANKKMLK
DAFSLLAYSDPWNSPVGNQLDPIQREPVCSALNSAILETHNLPKQPPLALAMGQATQCLGLMARSGVGSC
AFATVEDYLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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