NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49143.1 Public Mus musculus 12 Trip11 23 108 98 CCDS HistoryNCBI Gene:109181Re-query CCDS DB by CCDS ID:49143.1Re-query CCDS DB by GeneID:109181See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021605.13 ENSMUSP00000021605.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021605.13Link to Ensembl Protein Viewer:ENSMUSP00000021605.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021605Re-query CCDS DB by Protein ID:ENSMUSP00000021605
Original member Current member NCBI NM_028446.1 NP_082722.1 Accepted alive Link to Nucleotide Sequence:NM_028446.1Link to Protein Sequence:NP_082722.1Re-query CCDS DB by Nucleotide ID:NM_028446Re-query CCDS DB by Protein ID:NP_082722Link to BLAST:NP_082722.1

Chromosomal Locations for CCDS 49143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 101837546 101837766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101844780 101844924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101845058 101845174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101845732 101845846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101846596 101846677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101862593 101862692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101871824 101871927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101873323 101873486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101877955 101878148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101878789 101878929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101883256 101886276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101886808 101887020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101889705 101889791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101890578 101890618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101893431 101893793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101894262 101894427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101895651 101895716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101898825 101899103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101902232 101902342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101905755 101905816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101912690 101912828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5931 nt):
ATGTCGTCCTGGCTCGGGGGCCTCGGCTCCGGCTTGGGCCAGTCTCTCGGTCAAGTAGGGGGCAGCCTGG
CTTCCCTCACTGGCCAGATTTCGAACTTCACGAAGGATATGCTGTTGGAGGGCACGGAGGATGTGCCAGC
AGATTTCCCTAATTCCGGGAGAGAGGAGAATGAAGCCACTCATTCAGTCTTAAGATCAGAGAATGAAAGG
CTTAAAAAGCTTTACACTGATCTAGAGGAAAAGCATGAAGCATCCGAACTTCAAATTAAGCAGCAATCTT
CCAGTTACCGAAGTCAGTTACAGCAGAAAGAGGAAGAAATCAACCACCTTAAAGCAAGGCAGCTCGCACT
ACAGGATGAACTGCTCAGACTGCAGTCAGCTGCTCAGTCAGCCCACTTAGGATCTGGCAGCGCACCAGCA
GCCAGTGCATCATCTTCATTCAGCTATGGGGTCAGTCATCGTGTGTCAGCCTTCCATGAAGACGACATGG
ACTTTGGTGATGTGATCTCATCACAACAAGAAATAAACAGATTATCAAATGAAGTTTCAAGACTTGAGTC
TGAACTTGGACATTGGAGACATATTGCTCAGACTAAGGTACAGGGAGCACAAAGCTCTGATCAAACTGAA
ATCTGCAAACTACAAAATATTATTAAGGAACTTAAACAGAACAGAAGTCAGGACCTCGATGACCATCAGC
ATGAGCTGTCAGCCCTGCAGAACGCTCATCAGCAGAAGCTGACAGAGATAAGTCGGCGGCATCGAGAGGA
GTTAAGTGACTATGAAGAGCGTATTGAAGAACTGGAAAATCTGTTACAGCAAGGTGGCTCAGGAGTTACG
GTAACTGATCACTCTAAAGTGTATGAGATGCAAAACACTATTCAGATCTTACAGATGGAAAAAGTAGAAT
CTACCAAACAAATCGAAGACCTTGAGAATAAAATAAAAGAGATACATAAAAGATTGTCTTCTGCAGAACA
TGACCAGGAAGTCTGGAAAAAAGAACAAGAGCGGCTGGAAGTGGAAAAGAGAGAGATGACTGAGCAGTGT
GAGCGCTTGAAGCTGGAACTCAGTGAAGCCCAGCAGAGTGCTCTGCGGCAGAGTGATGCTGCGGTGGAGG
AGGAGACGATCCTCCCACACAGCTCCTCAGTCGCAGAGGTCCTGAGATTGCAGCAAGCTTTGACTGATGC
TGAAAATGAAATAATGAGACTAAGGAGTTTAAACCAGGATATCAGTCTTGCTGAAGACAATCAGAAACTT
CAAATGTGTGTCCAAACTTTAGAAAAAGAGAAGTCTTTATTGAGTCAAGAAAAGGAAGAACTTCAGATAT
CACTTTCCAAACTGAGCAGTGAATATGAAGTCATTAAAAGTACAGCTACAAGGGACTTAGATTTGTTTTC
TCAAGTACATGACTTAAAACATAACCTGGAGGCGAAGGAGCAAGAACTGAACCAGAGTATTCATGAAAAT
GAAATCCTTATGGCTGAATTAGAAGAACTGGACAAGCAGAACCAAGAGGCTACTAAGCATGTGATTTTGA
TAAAAGATCAGCTATCAAAACAACAAAGTGAAGGAGATAGTGTCATCAAGAAACTGAAAGAAGAGCTAGC
TGGTGAGAAGCAGAGAACCCATCAGCTTGAGGATGATAAAATGAATATTATTAAAGAGTTAACCGTACAG
AAAGAAAAGCTAACTCACAGTGAACAGGCCCTAAGTGATTTACAGTTAACCAAACAGAAGCTTGAAGATA
AAGTAGAAGATTTAGTAGATCAGCTAAGTAAATCAGAGAAAAACAATTTTGACATTCAGAAGGAGAACCA
TGAACTGAGGGAACACATCAGACAAAATGAAGAGGAGCTGTCCACAGTCAGGAGTGAGTTAACTCAGTCC
CAAACCCAGGGCTCCAGCAGGAACGTGAAGGATGACTTACTTAAAGAAAGGGAAACTCAAGTTCAAAACT
TAAAGCAAAATCTTTCAGAAGTAGAACAGCTCAATGAACATTTAGAGCAAGTTGCTTTTGATCTCAGAAC
AGAAAATGAAGAGTTGCTTGAAGCATATGAAGAGGTAAGAAATCAGTTGGAAGAATCTGTTGCTGGCAAC
AAGCAGATTTCTCTGGAAAAAACTGCTATGCTGGAATGGGAAAAGGCACCACTAGAAACAGAGCTGTGTC
GAGCTGAAAAGCGGGTGTTGGAAGAAGAGCGGAAGTACGAGCAAACTGTCCAGGAACTGTCCAGCGCGTG
CAGCCCCGATACCTCCGCCTTACAGCTGGAACAGGAGCGCTTAATTCAACTCAATCAAGAAAAAGACTTT
GAAATAGCAGAACTCAAAAAAAGTATTGAGCAAATGGATACTGATCATAAACGAACCAAGGAGACTTTGT
CATCTAGTTTAGAAGAGCAGAAACAATTGACACAACTTATAAATGAGAAAGAGATTTGTATTGTGAAACT
TAAAGAAAAAAGTTCAGAACTGCAGAAGGAATTAGACAAATGTGCTCAGACCTTAAGGAAAAATGAGACT
TTAAGGCAGACCATAGAAGAAAAGGATAGAAGTCTTGGATCCATGAAAGAAGAGAACAATCACTTGCAAG
AGGAGCTGGAGCGGCTCCGGGAGCAGCAGAGTCGGGTAGTGCCCGCGCCTGAGCCCAGAACCCTTGACAG
CACCACCGAGCTGGAGTCTGAGCTGTCTCAGCTGCACAGAATCAAGGGTCATCTGGAAGAAGAGATTAAA
CATCACCAGAAGATGATTGAAGATCAAAACCAGAGCAAGCTGCAGCTACTCCAGTCTCTACAGGAGCAGA
AGAAAGAACTGGATGAGTTTAAATACCAGCATGAACAAATGAGTATCTCACACACACGACTCTTTTTAGA
AAAAGATGAGGAAATTAAGAACTTGCAAAAAACAATTGAACAAATAAAAGCCCAGTTGCATGAAGAAAGG
CAGGATAGTCAAACAGAGAATTCCGATATTTTTCAAGAAACAAAAGTTCAGAGCCTTAGTATAGAACATG
GAAGTGAAAAACATGACCTCTCTAAAGCGGAGACGGAAAGGTTAGTGAAGGGGATAAAGGAGAGGGAGCT
GGAGATCAAGCTTCTGAATGAGAAGAACACCTCGCTAACTAAACAGATCGATCAGCTGTCCAAAGACGAG
GTCGGCAAGCTCACGCAGATCATCCAGCAGAAGGACTTGGAGATACAGGCTCTTCATGCCAGGATCTCCT
CCGCGTCCTACTCACAGGATGTTGTGTACCTTCAGCAGCAGCTGCATGCATACGCTATGGAAAGAGAGAA
AGTGATGGTTATTTTGAATGAGAAGACAAGGGAAAATAGCCAGCTAAAAACAGAATATCATAAGGTGATC
GATATTATTAGTGCCAAAGAAGCAGCCCTTATTAAGTTGCAAGATGAGAATAAGAAAATGTCCACTAGAT
TTGAAAGTAGTGGTCAAGATATGTTTAAAGAAACTATTCAGAATTTATCCCGGATCATTCGAGAAAAGGA
CATTGAGATCGATGCACTGAGTCAGAAGTGCCAGACCCTGCTGACAGTCTTGCAGACTTCTGGCACGGGG
AGTGAGGCTGGAGGGGTTAACAGTAACCAGTTTGAGGAGCTCTTACAGGAGCGGGATAAACTGAAGCAGC
AGGTGAAGAAAATGGAGGAGTGGAAACAACAAGTGATGACCACCGTCCAGAACATGCAGCACGAGTCTGC
CCAGCTCCAGGAAGAGCTTCACCAACTTCAGGCACAAGTTTCGGTTGACAGTGATAACAATTCTAAACTG
CAAGTGGACTACACAGGCCTGATCCAAAGTTATGAGCAGAATGAAACCAAACTTAAGAACTTTGGGCAGG
AATTGGCACAAGTTCAGCATAGCATAGGGCAGCTTTGTAATACCAAGGACCTTCTTTTAGGAAAACTTGA
TATTATGTCTCCTCAGCTCTCCTCTGGCTCATCACTTACCTCTCAGGCAGCAGAGCCTCTTAGAGCAAGC
CAGTCTTCTGAGCCACATGAGTCTTCTCAGTTGCTTCAACAAGAAGTAGATGATCTGAGAAAATCACTGC
AGGAGAAAGATGCCACAATTCGAACGCTCCAGGAAAACAATCATAGACTGTCTGACTCTGTTGCTGCTTC
CTCAGAGGTAGAAAGAAAAGAACACGAGCAAGCTGATTCAGAAATTAAGCAGCTGAAGGAAAAACAAGAG
GTTTTACAAAACTTGCTTAAGGAAAAAGACCTCTTAATCAAAGCCAAAAGTGACCAATTACATTCTTCAA
ATGAAAACCTTGCTAACAAAGTGAATGAAAACGAGCTTTTGAGGCAGGCAGTGACAAATTTGAAGGAGAG
AATATTGATTTTAGAAATGGACATTTCTAAATTAAAAGGGGAAAATGAAAAAATAGTAGACGCATCCAAG
GGGAAGGAAACAGAATACCAGGCGTTACAAGAGACCAACATGAAGTTTTCCATGATGTTACGAGAAAAGG
AGTTTGAATGCCATTCAATGAGAGAGAAGGCACTTGCTTTTGAGCAACTACTGAAAGAAAAAGAACAGGG
CAAGGCTGGGGAGCTAAATCAACTTTTAAATGCAGTTAAATCAATGCAGGAGAAGACAGTTACGTTTCAG
CAGGAAAGAGACCAAGTTATGTTGGCCCTGAAACAGAAGCAAATGGAAACCAGTACCCTGCAGAATGAGG
TCCAGCGCTTACGGGACAAAGAATCCCGGCTGAACCAGGAGCTACAGAGACTGCGTGACCACCTCTTAGA
GTCAGAAGACTCTCATACGCGGGAAGCTTTGGCTGCAGAAGACAGAGAGGCCAAACTGAGGAAGAAGGTC
TCGGTGTTGGAGGAAAAGCTGGTGTCATCCTCTAATGCAATGGAAAACGCAAGTCATCAAGCCAGTGTGC
AAGTAGAGTCTTTACAAGAACAACTGAACATGGTCTCCAAGCAAAGAGATGAGACTGCCCTGCAACTCTC
TGTCTCTCAGGAACAAGTGAAGCAGTATGCTTTGTCACTAGCCAATCTGCAGATGGTTCTTGAACACTTC
CAACAAGAGGAAAAAGCTATGTATTCTGCTGAATTAGAAAAGCAAAACCACCTCTTAGCTGAATGGAAGA
AAAAGGCAGAGAGTCTGGAAGGAAAAGTGTTATCGCTGCAGGAACGTTTGGATGAAGCAAATGCTGCACT
GGATTCAGCATCAAGACTTACAGAACAGTTAGATTTAAAAGAAGAGCAAATTGAAGAACTTAAAAAGCAA
AATGAGCTCCACCAAGAGATGCTGGACGACGCGCAGAAGAAACTGATGAGCTTGGTCAACAGCACAGAAG
GGAAAGTGGACAAAGTCCTCATGAGAAACCTCTTTATCGGTCATTTCCACACACCTAAACACCAGCGTCA
CGAAGTCCTTCGGCTCATGGGGAGCATCCTGGGTGTTAAAAGGGAAGAGATGGAGCAGCTGTTTGCAGAA
GATCAAGGAGGTGTTACTCGGTGGATGGCTGGATGGCTGGGAGGAGGATCGAAAAGTGTGCCCAATACAC
CTTTGAGACCAAATCAGCAGTCTGTGTTCAATAGTTCTTTTTCAGAACTCTTTGTTAAATTTCTGGAAAC
AGAATCTCATCCATCTGTCCCGCCTCCAAAGCTGTCAGTCCATGGCCTGAAGCCTCTAGATTCTCCAGGA
AGAAGGAAAGCTGACACAGGCATACCCGAAAGTTTTAGAGATACAGCAGAATCCAGGGCAGGAAGAAGAA
CAGATGTGAATCCATTCTTGGCTCCCCGCTCAGCAGCTGTGCCCCTTATTAACCCAGCTGGACATGGACC
TGGTGGGCCTGGGCATCTTCTTTTGAAACCCATCTCAGATGTTCTACCCACGTTTACACCTTTGCCAGTG
TCACCTGACAACAGTGCAGGTGTTGTATTGAAAGACCTTCTAAAGCAATAG

Translation (1976 aa):
MSSWLGGLGSGLGQSLGQVGGSLASLTGQISNFTKDMLLEGTEDVPADFPNSGREENEATHSVLRSENER
LKKLYTDLEEKHEASELQIKQQSSSYRSQLQQKEEEINHLKARQLALQDELLRLQSAAQSAHLGSGSAPA
ASASSSFSYGVSHRVSAFHEDDMDFGDVISSQQEINRLSNEVSRLESELGHWRHIAQTKVQGAQSSDQTE
ICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVT
VTDHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQC
ERLKLELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKL
QMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHEN
EILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQ
KEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQS
QTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGN
KQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDF
EIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNET
LRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIK
HHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEER
QDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDE
VGKLTQIIQQKDLEIQALHARISSASYSQDVVYLQQQLHAYAMEREKVMVILNEKTRENSQLKTEYHKVI
DIISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQTSGTG
SEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKL
QVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRAS
QSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQE
VLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASK
GKETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQ
QERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKV
SVLEEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHF
QQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEELKKQ
NELHQEMLDDAQKKLMSLVNSTEGKVDKVLMRNLFIGHFHTPKHQRHEVLRLMGSILGVKREEMEQLFAE
DQGGVTRWMAGWLGGGSKSVPNTPLRPNQQSVFNSSFSELFVKFLETESHPSVPPPKLSVHGLKPLDSPG
RRKADTGIPESFRDTAESRAGRRTDVNPFLAPRSAAVPLINPAGHGPGGPGHLLLKPISDVLPTFTPLPV
SPDNSAGVVLKDLLKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH