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Report for CCDS49082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49082.1 Public Mus musculus 12 2700049A03Rik 23 108 98 CCDS HistoryNCBI Gene:76967Re-query CCDS DB by CCDS ID:49082.1Re-query CCDS DB by GeneID:76967See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49082.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045907.15 ENSMUSP00000044701.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045907.15Link to Ensembl Protein Viewer:ENSMUSP00000044701.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045907Re-query CCDS DB by Protein ID:ENSMUSP00000044701
Original member NCBI NM_029818.1 NP_084094.1 Updated not alive Link to Nucleotide Sequence:NM_029818.1Link to Protein Sequence:NP_084094.1Re-query CCDS DB by Nucleotide ID:NM_029818Re-query CCDS DB by Protein ID:NP_084094
Current member NCBI NM_029818.2 NP_084094.1 Accepted alive Link to Nucleotide Sequence:NM_029818.2Link to Protein Sequence:NP_084094.1Re-query CCDS DB by Nucleotide ID:NM_029818Re-query CCDS DB by Protein ID:NP_084094Link to BLAST:NP_084094.1

Chromosomal Locations for CCDS 49082.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 71137840 71138038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71139655 71139728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71140865 71140934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71142050 71142119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71148244 71148418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71150243 71150464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71152650 71152797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71154762 71154923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71157047 71157170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71158828 71158957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71160191 71160408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71161124 71161196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71162576 71162800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71164384 71164558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71167066 71167260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71170519 71170706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71173129 71173239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71175923 71176003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71177829 71178022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71179040 71179158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71184423 71184622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71187381 71187537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71188588 71188807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71189407 71189654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71190895 71190965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71193267 71193389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71194292 71194466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71242944 71243095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4299 nt):
ATGAAAAACGTTGAGTTTAGCCTGGAAAGGGGGCAAAGGCTTAAAATGCCAGCGAGGAAACTGCGAGAGA
TTGTTTCTCCAAACCAAGGGAATAAATTGGCTGTGGTGGAAGATGAGCTGCCCCGTGTTCCTCCAGCCCT
GGCTGCAAATAAACGTCTTGCTGTTGAAACGAGGACTAGTTCTAATGGAACGTTATGTGGCTCCTTGGAT
TTAACTTCTGCAAGACTGTATCACCAGCCTCTGTTAGAAAGTCCTCCTGCGTCCAAGAAAAGTGATTTTT
CTAAAGATGCTGTAGTTCGGCAGTTACCTTTGAATAAAACAGAAGAGAACAACGCACCAAAAGCAAATGA
CATCTTTATTTCTCAGTACACCATGGGACAGAAAGATGCTCTGAGAACTGTTTTAAAGCAAAAAGCTCAA
AGCATGCCTGTTTTTAAGGCGGTGAAAGTACATCTTTTTGAAGACACGAGTACAGAAAAGAATACTGTTG
CTCAGGAGACTGAAACTCCACCCAATAGAATTGATTCAGCTACAACTGTGGCTGCGGCAACTGCCGCTGC
CATCGCAACAGCAGCTCCTTTGATCAAGGTACAGAGTGATTTGGAGGCAAAGGTTAATTGTGTTGGAGAG
TTACTTACTAAGTTACAGGAGACTGATAAACAGTTACAGCGCGTGACAGAGCACCAAGCCAGCGTTCAGA
GTAAGCAAGAGAAAGTGCACTGTCATGACCACGACAAGCAGATGAACGCGTTCATGGAGCAGCATATCAG
GCACCTTGAAAAACTACAGCAACAGCAGATAGACATTCAGACCCATTTTATTGATGCTGCACTCAAGGCT
AGCAGTCTTCAACTTGGCATGTCCACGTCCAGAGCAGTGGGGAAGTATTCTGGAAAACTGGGAAGCCCTA
GTGTTGGGAGCAGTGTTTTTTCACACAACACATTTGTTTCTAAACGAGTGCCTTTAAGTGAAGACACAGA
TTTTGATGGGCAGAAATCTCCTTTAGAGACCCCAGCACCTCGCAGGTTTGCCCCTGTACCTGTTTCAAGG
GATGGAAAAATAACAAAAAGGGAAAGCCCTACAGAAGAAAAAGAAAATATGGAAATGAACAGTCCTAAAG
GAAATGTAAGACTGTTGGAACAAGTACTGAATAGTAATGAGTGTTTGACAAGAAAGACTGAATCATCAGA
TATAACCTCACTAACTCAGCCAAAAATGGGATGGAATTTAGAGAAAAGAGACAGCACTGAAACTCTACAT
TCACAAATATTTCCTTCCTCTGAAGAGCGGGGAACAGCTCAAGTACCCGTGCCGAAGTATAATGATGTTG
TTCATGATCTTGGCCAGAAGAAACAAGCAAGTGACATGCTCCAGATAAAGCAATCTCCAGTTACCTTGAG
GCTTTCAGATCATCCGCATAATCCTGCCTTGCTCCAGACAACCAATACAAGGTCTGTCTTGAAAGATGCT
GCGAAGATTCTGAGAGGAGTACAAAACAATAAAAAAGTACTAGAAGAAAACCTGGAAGCTATCGTTCGTG
CAAAGGATGGAGCTGCTATGTATTCATTTATCAATGCTTTAGCTACCAATAGAGAGATGTCAGAGAAAAT
TAGGATCAGAAAGCAGGTAGATGAATGGATTAAAATCATTTCAGCAGAAATCCAGGATGAACTTATGAGA
AAAGATTATGAACAAAAGAGATTTGATCCAAAGAATCAAAGAAACAAGAAAGCTCTAACTATGAGTAGAG
ATATTAAAGCCAATAACCAAGAAAAAACGGTGAACAGATCTGTAATTCCAAGAAGCCATTATCAAAAGCA
AACCCAGGAGCAGTTTACAAGTCCACCTGTGAGGAACTTGCCTGCCTCCGGCCCGCAGAAAGAGAGGAGT
GGCCTCTTGAAGTCAGCCACAACGTTGCAAGACGAGGATTATATGTTACAGATATATGGGAAGCCAGTTT
ATCAGGGCCACCGCAGCACTCTTAAGAAAGGACCGTATCTCAGATTCAGTTCTCCGTCTCCTAAGGCCAA
GCCACAGAGGCCAAGGGTGATAGAGCTAGTGAAAGGCACTAAAGTCAAGTCAGCAAAAACACAAACTGAC
TTTCATGCTGCATCACGTATGAAAATGGATTCTAAAATACAGCATCCCATCACCGCACTACCTCATGCTG
ATCAGCAGTATATGGTCAGCCCAAGCAGAGAAATGCCTACTGTTTCAGGTACCCTGGAAGGTCATCTAAT
TCCTATGGCAATCCTCTTAGGACAAACCCAAAGCAATAGTGACTCCATGCCACCTGCTGGAGTCACTGTA
AACAAGCCACGCCCCGTGACTGTGACCACTTCTATTCCTCCGGCATCTCGAAAAGGGAACGCTGGAGTCA
AGAAACCCAACGTAGCCATTGTAGAGATGAAATCAGAGAAGAAGGACCCTCCCCAGCTCTCTGTACAGAT
ATTACCTAGTGTGGATATTGATAGCGTTTCATACAGCAGTACTGACGGGGCTTCCTCTCCACCAAGTCCC
AAAGAAGCCTCTCTTCCTCCACTGCACACCTGGATCCAGACTCCAGACTTTATGAAGGTGGATGAAGAAG
AGGTGCCCCTTCCAGGAACTAACTTTGATGAAGTAATCGATGTTATTCAGGAAGAAGAAAAACGTGATGA
AATTCCTGAATGCTCTGCACCAATGTTGGAGTTTAACAGAAGTGTTAAAGTTGTTCCTACAAAATATAAT
GGTCCTTCATTTCCTCCTGTAGTTTCTGCTTACCATCCCACTACTGATATTTTAGATAAAGTAATTGAGA
GAAAAGAAACATTGGAAAATAGTTTAATTCAGTGGGTAGAACAAGAAATAATGTCAAGAATTATCTCTGG
GCTCTTTCCACTCCAGCAACAGGCCAGACTTGATGCCAGTGTCTCAGTAAGTGAGGCGAGCGAACCGTCA
GCTTCTGACATTGTTGCAGGAACAAGCAGTGGAGCGCTCCAGCGTATGGTTGATGCCAGAGTTCCTGTGA
ACTCGGACATGGTCAGCCATTTTGTCAATGAAGCTCTGACTGAGACCATTGCTGTCATGTTAGCTGACAG
AGAAGCAGAGAGGCAAAGGGCTGCTGCCACAAGTGTTCCTGGTGATCTTTCAGGAACTGAAACTAACCTG
TTGGCAAGAGTTTGTGCTCCAGTAGCGACGCCGCAGCCCACTCCCCCCTGCTCACCATCACCTGTGAGGG
AGCACGTGCGAGTGAAAACGCCAGACTCTTCTCCCTGTGAATCCGATCCAGATGCGGCTTCTTCTATAAA
AGAGATACGCGTTGAAAAAGGAAGTGATATGCCTGCTGTCATGCTTGTTAGTACACCAACACGCACTCCT
GTCGCTACCCCTCCTCCAGCAGCAGCTCTTACCCCAACTTTGTCCGAAACTTCCATTGACAAGTTGAAGT
TATCAAGCCCTGAACTTCCCAAGCCATGGGACAGTGGAGACCTGCCACTGGATGAAGAGAATCCTAACTC
TCTTCAAGAGCTTCCTCACCCAAGAGCGGTTGTAATGTCTGTGGCTAATGAAGAACCTGAGAGTGTGGAC
TTTTCTGCTCAGCCTGCACCTCCGGAGCCAGCTCCCTCAGCACCACTTCCTGAGGGCACCAAGGCCCCTT
CCCTCCAGCGAGTACCAAGTTCAGGTTCATCCACCCTGGAGAACACTCTGAGCACTGTCACTGAAACAGA
AACGCTAGACAGGCATATATCTGAAGGGGAGATCTTATTTAGCTGTGGTCAAAACTTGGCTACCAAGAGA
CCTGGGGACTTGTTTCTGATGAACATAAATGACAGCTTATCCAGCACTCTGCAGGATGCCCTTGAAATGG
AAGATGACCCTCCCAGTGAAGGGCAGGTGATTAGGAGGCCCCACAAAAAGCGTCATGAAGATGCCATCGT
TGCCCTTCTTACTAAGCAACAACGGGAGTTATTAGTTTCACAGCAAGAGGAGGACTTGGATAACAGCGTG
GGTGAGCTTAGTGAAGGACAGAGGCTCGTGCTGAAAGCAGCAGAGGACATCTCAGCAGGACCGTCCGGCC
AAATGCTGCCGCCCACTTCTCCTGCAGAGCCCTCCTATCAGCACGCAGACCCTCGGCTGGTATTGCAGCA
GTCTGACATGGCCTCAGGTGGCCCGGCAGATCTGCTCCTCATTGCACATGTGTCACCCGCCAGGATGTCT
GTGACTCTACCCTCTGCGAACCTTGAGGACTGCTCTCAGTCCCTGAGCACCAGCTCCATGCATGGCGGCA
CCGAATCCTCAGGGACAGACACCTTCTGA

Translation (1432 aa):
MKNVEFSLERGQRLKMPARKLREIVSPNQGNKLAVVEDELPRVPPALAANKRLAVETRTSSNGTLCGSLD
LTSARLYHQPLLESPPASKKSDFSKDAVVRQLPLNKTEENNAPKANDIFISQYTMGQKDALRTVLKQKAQ
SMPVFKAVKVHLFEDTSTEKNTVAQETETPPNRIDSATTVAAATAAAIATAAPLIKVQSDLEAKVNCVGE
LLTKLQETDKQLQRVTEHQASVQSKQEKVHCHDHDKQMNAFMEQHIRHLEKLQQQQIDIQTHFIDAALKA
SSLQLGMSTSRAVGKYSGKLGSPSVGSSVFSHNTFVSKRVPLSEDTDFDGQKSPLETPAPRRFAPVPVSR
DGKITKRESPTEEKENMEMNSPKGNVRLLEQVLNSNECLTRKTESSDITSLTQPKMGWNLEKRDSTETLH
SQIFPSSEERGTAQVPVPKYNDVVHDLGQKKQASDMLQIKQSPVTLRLSDHPHNPALLQTTNTRSVLKDA
AKILRGVQNNKKVLEENLEAIVRAKDGAAMYSFINALATNREMSEKIRIRKQVDEWIKIISAEIQDELMR
KDYEQKRFDPKNQRNKKALTMSRDIKANNQEKTVNRSVIPRSHYQKQTQEQFTSPPVRNLPASGPQKERS
GLLKSATTLQDEDYMLQIYGKPVYQGHRSTLKKGPYLRFSSPSPKAKPQRPRVIELVKGTKVKSAKTQTD
FHAASRMKMDSKIQHPITALPHADQQYMVSPSREMPTVSGTLEGHLIPMAILLGQTQSNSDSMPPAGVTV
NKPRPVTVTTSIPPASRKGNAGVKKPNVAIVEMKSEKKDPPQLSVQILPSVDIDSVSYSSTDGASSPPSP
KEASLPPLHTWIQTPDFMKVDEEEVPLPGTNFDEVIDVIQEEEKRDEIPECSAPMLEFNRSVKVVPTKYN
GPSFPPVVSAYHPTTDILDKVIERKETLENSLIQWVEQEIMSRIISGLFPLQQQARLDASVSVSEASEPS
ASDIVAGTSSGALQRMVDARVPVNSDMVSHFVNEALTETIAVMLADREAERQRAAATSVPGDLSGTETNL
LARVCAPVATPQPTPPCSPSPVREHVRVKTPDSSPCESDPDAASSIKEIRVEKGSDMPAVMLVSTPTRTP
VATPPPAAALTPTLSETSIDKLKLSSPELPKPWDSGDLPLDEENPNSLQELPHPRAVVMSVANEEPESVD
FSAQPAPPEPAPSAPLPEGTKAPSLQRVPSSGSSTLENTLSTVTETETLDRHISEGEILFSCGQNLATKR
PGDLFLMNINDSLSSTLQDALEMEDDPPSEGQVIRRPHKKRHEDAIVALLTKQQRELLVSQQEEDLDNSV
GELSEGQRLVLKAAEDISAGPSGQMLPPTSPAEPSYQHADPRLVLQQSDMASGGPADLLLIAHVSPARMS
VTLPSANLEDCSQSLSTSSMHGGTESSGTDTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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