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Report for CCDS48843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48843.1 Public Mus musculus 11 Atp2a3 23 108 98 CCDS HistoryNCBI Gene:53313Re-query CCDS DB by CCDS ID:48843.1Re-query CCDS DB by GeneID:53313See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108485.8 ENSMUSP00000104125.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108485.8Link to Ensembl Protein Viewer:ENSMUSP00000104125.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108485Re-query CCDS DB by Protein ID:ENSMUSP00000104125
Original member Current member NCBI NM_001163336.1 NP_001156808.1 Accepted alive Link to Nucleotide Sequence:NM_001163336.1Link to Protein Sequence:NP_001156808.1Re-query CCDS DB by Nucleotide ID:NM_001163336Re-query CCDS DB by Protein ID:NP_001156808Link to BLAST:NP_001156808.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156808.1 999 Q64518-2 999 100% 0 0

Chromosomal Locations for CCDS 48843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72961354 72961471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72970596 72970613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72970848 72970930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72972145 72972249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72972403 72972541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72972822 72972902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72972994 72973079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72975186 72975650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72977138 72977226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72977345 72977447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72978216 72978347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72978680 72978805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72980127 72980345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72980439 72980774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72981728 72981948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72982624 72982826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72983460 72983545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72987974 72988107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72988463 72988580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72988970 72989087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72991689 72991708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3000 nt):
ATGGAGGAGGCGCACCTGCTCTCCGCTGCCGACGTGCTGCGTCGCTTCTCGGTGACAGCCGAGGGCGGCT
TGAGCCTGGAGCAGGTGACCGACGCGCGGGAGCGTTACGGCCCCAACGAGCTCCCGACCGAGGAAGGGAA
ATCCCTGTGGGAGCTGGTGGTGGAGCAGTTTGAGGACCTCTTGGTGCGCATCCTGCTGCTGGCAGCTCTG
GTTTCCTTTGTCCTGGCCTGGTTCGAGGAGGGTGAGGAGACCACAACGGCCTTCGTGGAGCCCCTGGTCA
TCATGCTAATTCTCGTGGCCAATGCGATCGTGGGAGTGTGGCAGGAACGCAACGCAGAGAGTGCAATTGA
GGCCTTGAAGGAGTATGAGCCTGAGATGGGTAAGGTGATCCGGTCTGACCGCAAGGGTGTACAGAGGATC
CGAGCCAGGGACATCGTCCCTGGGGACATTGTGGAAGTGGCAGTGGGAGACAAGGTACCCGCTGACCTCC
GTCTCATCGAGATCAAGTCCACCACACTTCGAGTGGACCAGTCCATCCTGACAGGGGAATCCGTGTCTGT
GACGAAGCACACAGATGCCATTCCAGACCCCCGAGCCGTGAACCAGGACAAGAAGAACATGCTATTTTCT
GGCACCAATATTGCATCAGGCAAAGCCCTGGGTGTGGCTGTGGCTACAGGCCTGCAGACAGAGCTGGGCA
AGATTCGGAGCCAGATGGCGGCTGTGGAGCCTGAGCGGACGCCATTGCAGCGCAAGCTGGATGAATTTGG
GAGGCAGCTGTCCCATGCCATCTCTGTGATCTGTGTGGCTGTGTGGGTCATCAACATCGGCCACTTTGCT
GACCCGGCCCACGGTGGATCCTGGCTCCGTGGTGCAGTCTACTACTTCAAGATCGCTGTGGCCCTGGCTG
TGGCTGCTATCCCCGAGGGTCTCCCAGCAGTCATCACTACATGCCTGGCCCTGGGCACAAGACGTATGGC
ACGTAAGAATGCCATTGTGCGGAGCCTGCCTTCTGTGGAGACGCTGGGCTGCACCTCGGTCATCTGCTCT
GACAAGACGGGGACGCTCACCACCAATCAGATGTCTGTCTGCAGGATGTTCGTGGTGGCTGAAGCAGAGG
CAGGCACCTGTCGTTTGCATGAATTCACCATTTCGGGTACCACGTACACCCCAGAGGGCGAAGTGAGGCA
AGGGGAGCAGCCTGTGCGCTGTGGGCAGTTTGATGGGCTAGTGGAGCTCGCCACCATCTGTGCCCTCTGC
AATGATTCTGCGCTGGACTACAATGAGGCCAAGGGTGTGTATGAGAAGGTAGGAGAGGCCACAGAGACCG
CCCTGACTTGCCTGGTAGAGAAGATGAATGTGTTTGACACAGACCTGAAAGGACTGTCGCGGGTGGAGCG
TGCTGGCGCCTGCAACTCAGTCATCAAGCAACTCATGCGGAAAGAGTTCACCCTGGAGTTCTCCCGGGAC
CGGAAGTCTATGTCCGTGTACTGCACACCTACTCGTGCTGACCCCAAGGTCCAGGGCAGCAAGATGTTTG
TGAAGGGAGCTCCTGAGAGTGTAATTGAGCGCTGTAGCTCAGTCCGAGTGGGCAGCCGAACAGCACCCCT
GAGCACCACTTCCAGAGAGCATATCCTGGCCAAGATCCGGGACTGGGGCTCAGGCTCTGACACACTGCGC
TGCTTAGCCTTGGCCACCAGGGACACACCCCCAAGGAAGGAGGACATGCATCTAGATGACTGCAGCCGGT
TTGTACAGTACGAGACAGACCTGACCTTCGTGGGCTGCGTGGGCATGTTAGACCCACCGAGACCAGAGGT
GGCTGCTTGTATCACACGCTGTTCCCGGGCTGGCATTCGAGTGGTCATGATCACAGGGGACAACAAAGGG
ACAGCTGTGGCCATCTGCCGCCGACTTGGCATCTTTGGGGACACGGAGGATGTGTTGGGCAAGGCCTACA
CGGGCCGTGAGTTTGATGACCTCAGCCCAGAGCAGCAGCGCCAGGCTTGTCGCACTGCCCGGTGCTTTGC
CCGAGTGGAACCCGCACATAAGTCTCGAATCGTGGAGAACCTACAGTCCTTTAATGAGATCACTGCCATG
ACTGGCGATGGGGTGAATGATGCACCAGCCCTGAAGAAGGCAGAGATCGGCATCGCCATGGGCTCAGGCA
CTGCTGTGGCCAAGTCAGCAGCAGAGATGGTGCTGTCCGATGACAACTTTGCCTCCATTGTGGCTGCAGT
AGAAGAGGGCAGGGCCATCTACAACAACATGAAGCAGTTCATCCGCTACCTCATCTCCTCCAATGTTGGC
GAGGTTGTCTGCATCTTCCTCACAGCAATTCTGGGCCTGCCCGAAGCTCTGATCCCTGTGCAGCTGCTCT
GGGTGAACCTGGTAACAGATGGCTTACCGGCCACAGCCCTTGGCTTCAACCCACCAGATCTGGATATCAT
GGAGAAGCCGCCTCGGAATCCCCGTGAGGCCCTCATCAGTGGCTGGCTTTTTTTCCGCTATTTGGCTATT
GGAGTGTATGTAGGCCTGGCTACAGTGGCTGCCGCCACCTGGTGGTTCCTGTATGACACCGAGGGACCTC
AAGTCACCTTCTATCAGCTGAGGAACTTCCTGAAGTGCTCTGAAGACAATCCACTGTTTGCTGGCATTGA
CTGCAAGGTTTTTGAGTCACGCTTCCCCACAACCATGGCCTTATCTGTGCTTGTGACCATTGAAATGTGC
AACGCCCTCAACAGCGTCTCTGAGAACCAGTCACTGCTGCGCATGCCACCCTGGCTGAACCCTTGGCTGC
TGGGGGCTGTGGTCATGTCCATGGCTCTGCATTTTCTTATCCTCCTGGTGCCACCTCTGCCTCTCATTTT
TCAGGTGACCCCACTGAGTGGTCGGCAGTGGGGGGTGGTGCTTCAGATGTCTCTGCCTGTCATCCTGCTC
GATGAGGCCCTCAAGTATCTGTCCAGGAATCACATGGATGAAAAAAAGGACCTGAAGTAA

Translation (999 aa):
MEEAHLLSAADVLRRFSVTAEGGLSLEQVTDARERYGPNELPTEEGKSLWELVVEQFEDLLVRILLLAAL
VSFVLAWFEEGEETTTAFVEPLVIMLILVANAIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRI
RARDIVPGDIVEVAVGDKVPADLRLIEIKSTTLRVDQSILTGESVSVTKHTDAIPDPRAVNQDKKNMLFS
GTNIASGKALGVAVATGLQTELGKIRSQMAAVEPERTPLQRKLDEFGRQLSHAISVICVAVWVINIGHFA
DPAHGGSWLRGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMARKNAIVRSLPSVETLGCTSVICS
DKTGTLTTNQMSVCRMFVVAEAEAGTCRLHEFTISGTTYTPEGEVRQGEQPVRCGQFDGLVELATICALC
NDSALDYNEAKGVYEKVGEATETALTCLVEKMNVFDTDLKGLSRVERAGACNSVIKQLMRKEFTLEFSRD
RKSMSVYCTPTRADPKVQGSKMFVKGAPESVIERCSSVRVGSRTAPLSTTSREHILAKIRDWGSGSDTLR
CLALATRDTPPRKEDMHLDDCSRFVQYETDLTFVGCVGMLDPPRPEVAACITRCSRAGIRVVMITGDNKG
TAVAICRRLGIFGDTEDVLGKAYTGREFDDLSPEQQRQACRTARCFARVEPAHKSRIVENLQSFNEITAM
TGDGVNDAPALKKAEIGIAMGSGTAVAKSAAEMVLSDDNFASIVAAVEEGRAIYNNMKQFIRYLISSNVG
EVVCIFLTAILGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPRNPREALISGWLFFRYLAI
GVYVGLATVAAATWWFLYDTEGPQVTFYQLRNFLKCSEDNPLFAGIDCKVFESRFPTTMALSVLVTIEMC
NALNSVSENQSLLRMPPWLNPWLLGAVVMSMALHFLILLVPPLPLIFQVTPLSGRQWGVVLQMSLPVILL
DEALKYLSRNHMDEKKDLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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