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Report for CCDS48797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48797.1 Public Mus musculus 11 P4ha2 23 108 98 CCDS HistoryNCBI Gene:18452Re-query CCDS DB by CCDS ID:48797.1Re-query CCDS DB by GeneID:18452See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48797.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093107.11 ENSMUSP00000091749.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093107.11Link to Ensembl Protein Viewer:ENSMUSP00000091749.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093107Re-query CCDS DB by Protein ID:ENSMUSP00000091749
Original member Current member EBI ENSMUST00000174616.7 ENSMUSP00000133275.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174616.7Link to Ensembl Protein Viewer:ENSMUSP00000133275.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174616Re-query CCDS DB by Protein ID:ENSMUSP00000133275
Original member Current member NCBI NM_001136076.2 NP_001129548.1 Accepted alive Link to Nucleotide Sequence:NM_001136076.2Link to Protein Sequence:NP_001129548.1Re-query CCDS DB by Nucleotide ID:NM_001136076Re-query CCDS DB by Protein ID:NP_001129548Link to BLAST:NP_001129548.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129548.1 535 Q60716-2 535 100% 0 0

Chromosomal Locations for CCDS 48797.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 54110227 54110314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54110986 54111082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54111423 54111574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54114137 54114274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54117444 54117683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54119134 54119327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54120070 54120246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54124657 54124727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54124946 54125045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54125763 54125816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54126238 54126297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54129048 54129116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54129466 54129562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54131190 54131260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGAAGCTCCAGGTGTTGGTGTTGGTGTTGCTGATGTCCTGGTTCGGTGTCCTGAGCTGGGTGCAGGCAG
AATTCTTCACCTCCATTGGGCACATGACCGATCTGATTTACGCAGAGAAGGACCTGGTACAGTCTCTGAA
GGAGTACATCCTTGTGGAGGAAGCCAAGCTCGCCAAGATTAAGAGCTGGGCCAGCAAGATGGAAGCCCTG
ACCAGCAGATCAGCTGCCGACCCCGAGGGCTACCTGGCTCATCCTGTGAATGCCTACAAGCTGGTGAAGC
GGTTGAACACAGACTGGCCTGCACTGGGGGACCTTGTCCTTCAGGATGCTTCGGCAGGTTTTGTCGCTAA
CCTCTCAGTTCAGCGGCAATTCTTCCCCACTGATGAGGACGAGTCTGGAGCTGCCAGAGCCCTGATGAGA
CTTCAGGACACGTACAAACTGGATCCGGACACGATTTCCAGAGGGGAACTTCCAGGCACAAAGTACCAGG
CCATGCTGAGTGTGGACGACTGCTTTGGGCTGGGCCGCTCAGCTTACAATGAAGGAGACTATTACCATAC
TGTGCTGTGGATGGAGCAGGTACTGAAGCAGCTCGATGCTGGGGAGGAGGCCACTGTTACCAAGTCCCTG
GTGCTGGACTACCTGAGCTATGCTGTCTTCCAACTGGGTGACCTGCACCGTGCTGTGGAACTCACCCGCC
GCCTGCTCTCTCTTGACCCAAGCCACGAACGAGCTGGAGGGAATCTGCGGTACTTTGAACGGTTGTTAGA
GGAAGAAAGAGGGAAATCACTGTCAAATCAGACAGACGCCGGACTGGCCACCCAGGAAAACTTGTACGAG
AGGCCCACGGACTACCTGCCTGAGAGGGATGTGTACGAGAGCCTGTGTCGAGGGGAGGGCGTGAAACTGA
CACCCCGGAGGCAGAAGAAGCTTTTCTGTAGGTACCATCATGGAAACAGAGTGCCACAGCTCCTCATCGC
CCCCTTCAAAGAGGAAGACGAGTGGGACAGCCCACACATCGTCAGGTACTATGATGTGATGTCCGACGAA
GAAATCGAGAGGATCAAGGAGATTGCTAAGCCCAAACTTGCACGAGCCACTGTGCGTGACCCCAAGACAG
GTGTCCTCACTGTTGCCAGCTACAGAGTTTCCAAAAGCTCCTGGCTAGAGGAGGATGACGACCCTGTTGT
GGCCCGGGTCAACCGGCGGATGCAACATATCACCGGGCTAACGGTGAAGACTGCAGAGCTATTGCAGGTC
GCAAACTACGGAATGGGGGGACAGTACGAACCACACTTTGACTTCTCAAGGCGACCCTTTGACAGCGGCC
TCAAAACGGAGGGCAATAGGTTAGCGACGTTTCTTAACTATATGAGCGATGTCGAAGCTGGTGGTGCCAC
CGTCTTTCCTGACTTGGGAGCTGCTATTTGGCCCAAGAAGGGCACAGCTGTATTCTGGTACAACCTTCTT
CGCAGTGGGGAAGGTGATTATCGGACGAGACATGCAGCCTGCCCTGTGCTTGTGGGCTGCAAGTGGGTCT
CCAACAAGTGGTTCCATGAGCGAGGACAGGAGTTCTTAAGACCTTGTGGAACAACGGAAGTTGATTGA

Translation (535 aa):
MKLQVLVLVLLMSWFGVLSWVQAEFFTSIGHMTDLIYAEKDLVQSLKEYILVEEAKLAKIKSWASKMEAL
TSRSAADPEGYLAHPVNAYKLVKRLNTDWPALGDLVLQDASAGFVANLSVQRQFFPTDEDESGAARALMR
LQDTYKLDPDTISRGELPGTKYQAMLSVDDCFGLGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATVTKSL
VLDYLSYAVFQLGDLHRAVELTRRLLSLDPSHERAGGNLRYFERLLEEERGKSLSNQTDAGLATQENLYE
RPTDYLPERDVYESLCRGEGVKLTPRRQKKLFCRYHHGNRVPQLLIAPFKEEDEWDSPHIVRYYDVMSDE
EIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQV
ANYGMGGQYEPHFDFSRRPFDSGLKTEGNRLATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLL
RSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPCGTTEVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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