NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48604.1 Public Mus musculus 10 Col18a1 23 108 98 CCDS HistoryNCBI Gene:12822Re-query CCDS DB by CCDS ID:48604.1Re-query CCDS DB by GeneID:12822See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105409.7 ENSMUSP00000101049.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105409.7Link to Ensembl Protein Viewer:ENSMUSP00000101049.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105409Re-query CCDS DB by Protein ID:ENSMUSP00000101049
Original member NCBI NM_001109991.1 NP_001103461.1 Updated not alive Link to Nucleotide Sequence:NM_001109991.1Link to Protein Sequence:NP_001103461.1Re-query CCDS DB by Nucleotide ID:NM_001109991Re-query CCDS DB by Protein ID:NP_001103461
Current member NCBI NM_001109991.2 NP_001103461.1 Accepted alive Link to Nucleotide Sequence:NM_001109991.2Link to Protein Sequence:NP_001103461.1Re-query CCDS DB by Nucleotide ID:NM_001109991Re-query CCDS DB by Protein ID:NP_001103461Link to BLAST:NP_001103461.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103461.1 1527 P39061-1 1527 100% 0 0

Chromosomal Locations for CCDS 48604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 77053194 77053407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77054155 77054270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77054784 77054981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77055579 77055827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77057369 77057401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77058699 77058830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77059105 77059178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77059258 77059402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77059895 77060023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77060369 77060412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77063979 77064041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77064537 77064579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77065235 77065303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77066950 77067024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77067379 77067432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77067632 77067658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77068390 77068464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77069436 77069498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77069820 77069846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77069950 77069979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77070961 77071050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77071311 77071346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77071604 77071675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77072027 77072062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77072942 77072968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77073740 77073802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77074350 77074481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77076148 77076174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77077159 77077221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77077684 77077842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77077999 77078052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77078276 77078353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77078457 77078519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77079261 77079287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77080679 77080864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77081149 77081225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77085267 77085396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77087376 77087429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77088870 77088956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77095991 77096535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77112959 77113676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4584 nt):
ATGGCTCCCGACCCCAGCAGACGCCTCTGCCTGCTGCTGCTGTTGCTGCTCTCCTGCCGCCTTGTGCCTG
CCAGCGCTGATGGGAATTCCCTGAGTCCCCTGAATCCCCTGGTGTGGCTCTGGCCGCCCAAGACCTCTGA
TTCTTTGGAAGGCCCGGTCTCGAAACCCCAGAACAGTTCACCTGTGCAGTCCACAGAGAACCCCACCACG
CACGTGGTCCCCCAGGATGGCCTCACAGAACAACAGACGACTCCTGCCAGCTCCGAGCTGCCCCCGGAGG
AAGAGGAGGAGGAGGATCAGAAAGCTGGCCAGGGTGGCAGCCCTGCAACCCCTGCTGTCCCCATTCCCCT
GGTGGCCCCTGCTGCGAGCCCAGACATGAAGGAGGAGAATGTTGCGGGCGTTGGAGCCAAGATTCTGAAT
GTGGCTCAGGGCATTCGGAGCTTCGTCCAGCTGTGGGATGAGGACTCGACTATTGGGCACTCTGCTGGGA
CTGAGGTTCCAGATTCTTCAATCCCTACAGTCCTCCCCTCTCCTGCCGAGCTCTCCAGTGCTCCCCAGGG
GAGTAAGACCACTCTCTGGCTAAGCAGTGCCATTCCAAGTTCTCCAGATGCTCAGACAACTGAGGCTGGC
ACGCTGGCTGTGCCCACCCAGCTGCCTCCCTTCCAGAGCAACCTCCAGGCACCACTGGGAAGACCCTCAG
CCCCACCAGACTTCCCAGAGAATGTTGCTGAGGAGGTGGGGCTGCTGCAGCTCCTTGGAGACCCCCTACC
TGAGAAGATCTCACAAATCGATGACCCTCACGTCGGGCCGGCCTACATCTTTGGACCAGACTCCAACAGT
GGCCAGGTGGCCCAGTATCATTTCCCAAAACTCTTCTTCCGGGACTTTTCGCTGCTGTTTCATGTCCGGC
CAGCCACAGAGGCAGCAGGGGTGCTATTTGCCATCACAGATGCTGCCCAGGTGGTAGTCTCACTGGGCGT
GAAGCTCTCAGAGGTCCGAGATGGACAGCAAAACATCTCATTGCTCTACACGGAGCCTGGGGCCAGCCAG
ACCCAGACGGGAGCCAGCTTCCGCCTACCTGCATTTGTTGGGCAGTGGACACACTTCGCGCTCAGCGTCG
ACGGAGGCTCTGTGGCTCTCTACGTAGACTGTGAAGAATTCCAGAGGGTGCCATTTGCTCGGGCCTCGCA
GGGACTGGAGCTAGAGCGTGGCGCTGGCCTCTTTGTGGGTCAGGCTGGAACAGCAGACCCTGACAAGTTC
CAGGGGATGATCTCAGAGCTGAAGGTACGCAAAACCCCCCGGGTGAGCCCTGTGCACTGTCTGGATGAAG
AAGATGATGATGAAGACCGGGCATCTGGAGATTTTGGAAGTGGCTTTGAAGAAAGCAGCAAGTCACACAA
GGAGGATACATCTCTACTACCTGGGCTCCCTCAGCCACCTCCTGTCACTTCCCCACCCCTGGCTGGAGGC
AGCACCACAGAAGATCCTAGAACAGAAGAAACGGAGGAAGACGCCGCGGTAGATTCTATAGGAGCTGAGA
CCCTTCCTGGCACAGGTTCAAGCGGTGCATGGGATGAGGCTATCCAGAACCCCGGAAGGGGCTTGATAAA
GGGAGGTATGAAAGGACAAAAGGGAGAACCAGGTGCCCAGGGCCCACCTGGCCCAGCTGGGCCCCAGGGT
CCTGCCGGTCCAGTGGTCCAGAGCCCCAACTCACAACCTGTCCCTGGAGCACAAGGACCCCCGGGACCTC
AGGGGCCACCAGGGAAGGATGGCACTCCAGGAAGGGATGGTGAACCGGGTGACCCTGGTGAAGATGGGAG
ACCGGGTGACACTGGACCTCAAGGCTTTCCAGGGACCCCAGGAGATGTGGGCCCTAAGGGCGAGAAGGGA
GATCCTGGTATTGGGCCCCGAGGACCTCCAGGGCCTCCAGGGCCACCAGGACCCTCCTTCAGACAAGACA
AGCTGACCTTCATTGACATGGAGGGATCCGGTTTCAGCGGAGACATAGAGAGCCTTAGAGGCCCACGAGG
CTTCCCTGGCCCCCCGGGGCCCCCTGGTGTCCCAGGACTTCCTGGTGAGCCAGGACGCTTTGGGATCAAT
GGTTCCTATGCACCAGGACCTGCAGGCCTTCCTGGTGTACCTGGGAAGGAAGGACCCCCCGGTTTTCCAG
GTCCCCCGGGACCTCCAGGTCCTCCAGGCAAAGAGGGCCCACCAGGAGTGGCCGGCCAGAAAGGCAGTGT
TGGTGATGTGGGCATCCCAGGACCCAAGGGGAGCAAAGGAGACCTTGGGCCCATCGGTATGCCTGGCAAG
TCTGGCTTGGCTGGATCCCCTGGGCCAGTTGGACCCCCAGGACCTCCAGGGCCTCCAGGGCCACCAGGAC
CAGGATTTGCTGCTGGATTCGATGATATGGAAGGCTCTGGAATACCCCTCTGGACAACAGCCCGAAGCTC
TGATGGGCTGCAGGGACCTCCCGGGTCGCCGGGACTCAAGGGGGATCCTGGAGTGGCAGGCCTACCTGGA
GCCAAGGGAGAAGTTGGAGCAGATGGAGCCCAGGGCATCCCTGGTCCCCCAGGAAGAGAAGGTGCAGCTG
GATCTCCGGGGCCAAAAGGAGAGAAAGGGATGCCGGGAGAAAAGGGAAACCCAGGAAAAGATGGAGTGGG
CCGGCCGGGCCTCCCTGGGCCTCCAGGACCTCCAGGGCCTGTGATCTATGTGTCAAGTGAGGATAAAGCA
ATAGTGAGCACGCCAGGACCTGAGGGCAAGCCAGGGTACGCAGGCTTTCCTGGACCTGCTGGACCGAAGG
GTGACCTGGGTTCCAAAGGCGAGCAGGGTCTTCCGGGGCCCAAGGGTGAGAAGGGAGAGCCAGGCACTAT
CTTTAGTCCTGATGGCAGAGCTCTGGGCCATCCCCAGAAGGGAGCCAAGGGAGAGCCAGGCTTTCGAGGA
CCCCCGGGTCCTTATGGACGACCTGGGCACAAGGGTGAAATTGGCTTCCCTGGACGGCCGGGTCGACCTG
GAACGAATGGCTTAAAGGGAGAGAAAGGAGAGCCTGGAGATGCCAGCCTTGGGTTCAGCATGAGGGGATT
GCCTGGCCCCCCTGGGCCTCCAGGACCCCCAGGTCCTCCTGGGATGCCCATCTATGACAGCAATGCATTT
GTGGAGTCTGGCCGACCTGGACTACCAGGACAGCAGGGTGTGCAGGGGCCTTCAGGACCAAAGGGTGACA
AAGGAGAGGTGGGCCCACCTGGGCCACCAGGGCAATTCCCCATTGACCTCTTCCACCTGGAAGCGGAAAT
GAAGGGGGACAAGGGAGACCGAGGGGATGCTGGACAGAAAGGAGAGAGGGGAGAACCTGGGGCTCCTGGT
GGTGGATTCTTCAGCTCAAGTGTACCTGGCCCCCCCGGCCCACCTGGATACCCTGGAATTCCGGGTCCAA
AGGGAGAGAGCATCCGGGGGCCACCTGGCCCTCCTGGCCCGCAGGGACCTCCTGGCATTGGCTATGAGGG
TCGCCAGGGTCCCCCAGGACCTCCGGGACCTCCAGGACCTCCCTCCTTCCCTGGCCCTCACAGACAGACT
GTCAGTGTTCCTGGTCCTCCGGGCCCACCTGGTCCTCCAGGTCCCCCAGGAGCCATGGGTGCCTCTGCTG
GGCAGGTGAGGATCTGGGCCACATACCAGACCATGCTGGACAAGATCCGGGAGGTGCCGGAGGGCTGGCT
CATCTTTGTGGCCGAGAGGGAAGAGCTCTATGTACGCGTTAGAAATGGCTTCCGGAAGGTGCTGCTGGAG
GCCCGGACAGCCCTCCCGAGAGGCACGGGCAATGAGGTGGCTGCTTTGCAGCCCCCATTGGTCCAGCTTC
ATGAGGGCAGTCCATACACCCGGAGGGAGTACTCCTATTCCACGGCACGACCCTGGCGAGCAGATGACAT
CCTGGCCAACCCACCGCGCCTGCCAGACCGCCAGCCTTACCCCGGAGTTCCACATCACCACAGTTCCTAT
GTGCACCTGCCGCCAGCCCGCCCCACCCTCTCACTTGCTCATACTCATCAGGACTTTCAGCCAGTGCTCC
ACCTGGTGGCACTGAACACCCCCCTGTCTGGAGGCATGCGTGGTATCCGTGGAGCAGATTTCCAGTGCTT
CCAGCAAGCCCGAGCCGTGGGGCTGTCGGGCACCTTCCGGGCTTTCCTGTCCTCTAGGCTGCAGGATCTC
TATAGCATCGTGCGCCGTGCTGACCGGGGGTCTGTGCCCATCGTCAACCTGAAGGACGAGGTGCTATCTC
CCAGCTGGGACTCCCTGTTTTCTGGCTCCCAGGGTCAACTGCAACCCGGGGCCCGCATCTTTTCTTTTGA
CGGCAGAGATGTCCTGAGACACCCAGCCTGGCCGCAGAAGAGCGTATGGCACGGCTCGGACCCCAGTGGG
CGGAGGCTGATGGAGAGTTACTGTGAGACATGGCGAACTGAAACTACTGGGGCTACAGGTCAGGCCTCCT
CCCTGCTGTCAGGCAGGCTCCTGGAACAGAAAGCTGCGAGCTGCCACAACAGCTACATCGTCCTGTGCAT
TGAGAATAGCTTCATGACCTCTTTCTCCAAATAG

Translation (1527 aa):
MAPDPSRRLCLLLLLLLSCRLVPASADGNSLSPLNPLVWLWPPKTSDSLEGPVSKPQNSSPVQSTENPTT
HVVPQDGLTEQQTTPASSELPPEEEEEEDQKAGQGGSPATPAVPIPLVAPAASPDMKEENVAGVGAKILN
VAQGIRSFVQLWDEDSTIGHSAGTEVPDSSIPTVLPSPAELSSAPQGSKTTLWLSSAIPSSPDAQTTEAG
TLAVPTQLPPFQSNLQAPLGRPSAPPDFPENVAEEVGLLQLLGDPLPEKISQIDDPHVGPAYIFGPDSNS
GQVAQYHFPKLFFRDFSLLFHVRPATEAAGVLFAITDAAQVVVSLGVKLSEVRDGQQNISLLYTEPGASQ
TQTGASFRLPAFVGQWTHFALSVDGGSVALYVDCEEFQRVPFARASQGLELERGAGLFVGQAGTADPDKF
QGMISELKVRKTPRVSPVHCLDEEDDDEDRASGDFGSGFEESSKSHKEDTSLLPGLPQPPPVTSPPLAGG
STTEDPRTEETEEDAAVDSIGAETLPGTGSSGAWDEAIQNPGRGLIKGGMKGQKGEPGAQGPPGPAGPQG
PAGPVVQSPNSQPVPGAQGPPGPQGPPGKDGTPGRDGEPGDPGEDGRPGDTGPQGFPGTPGDVGPKGEKG
DPGIGPRGPPGPPGPPGPSFRQDKLTFIDMEGSGFSGDIESLRGPRGFPGPPGPPGVPGLPGEPGRFGIN
GSYAPGPAGLPGVPGKEGPPGFPGPPGPPGPPGKEGPPGVAGQKGSVGDVGIPGPKGSKGDLGPIGMPGK
SGLAGSPGPVGPPGPPGPPGPPGPGFAAGFDDMEGSGIPLWTTARSSDGLQGPPGSPGLKGDPGVAGLPG
AKGEVGADGAQGIPGPPGREGAAGSPGPKGEKGMPGEKGNPGKDGVGRPGLPGPPGPPGPVIYVSSEDKA
IVSTPGPEGKPGYAGFPGPAGPKGDLGSKGEQGLPGPKGEKGEPGTIFSPDGRALGHPQKGAKGEPGFRG
PPGPYGRPGHKGEIGFPGRPGRPGTNGLKGEKGEPGDASLGFSMRGLPGPPGPPGPPGPPGMPIYDSNAF
VESGRPGLPGQQGVQGPSGPKGDKGEVGPPGPPGQFPIDLFHLEAEMKGDKGDRGDAGQKGERGEPGAPG
GGFFSSSVPGPPGPPGYPGIPGPKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQT
VSVPGPPGPPGPPGPPGAMGASAGQVRIWATYQTMLDKIREVPEGWLIFVAEREELYVRVRNGFRKVLLE
ARTALPRGTGNEVAALQPPLVQLHEGSPYTRREYSYSTARPWRADDILANPPRLPDRQPYPGVPHHHSSY
VHLPPARPTLSLAHTHQDFQPVLHLVALNTPLSGGMRGIRGADFQCFQQARAVGLSGTFRAFLSSRLQDL
YSIVRRADRGSVPIVNLKDEVLSPSWDSLFSGSQGQLQPGARIFSFDGRDVLRHPAWPQKSVWHGSDPSG
RRLMESYCETWRTETTGATGQASSLLSGRLLEQKAASCHNSYIVLCIENSFMTSFSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH