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Report for CCDS48544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48544.1 Public Mus musculus 10 Amd1 23 108 98 CCDS HistoryNCBI Gene:11702Re-query CCDS DB by CCDS ID:48544.1Re-query CCDS DB by GeneID:11702See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099945.5 ENSMUSP00000097528.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099945.5Link to Ensembl Protein Viewer:ENSMUSP00000097528.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099945Re-query CCDS DB by Protein ID:ENSMUSP00000097528
Original member Current member EBI ENSMUST00000238969.1 ENSMUSP00000159133.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238969.1Link to Ensembl Protein Viewer:ENSMUSP00000159133.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238969Re-query CCDS DB by Protein ID:ENSMUSP00000159133
Original member Current member NCBI NM_009665.5 NP_033795.1 Accepted alive Link to Nucleotide Sequence:NM_009665.5Link to Protein Sequence:NP_033795.1Re-query CCDS DB by Nucleotide ID:NM_009665Re-query CCDS DB by Protein ID:NP_033795Link to BLAST:NP_033795.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033795.1 334 P0DMN7 334 100% 0 0

Chromosomal Locations for CCDS 48544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 40289329 40289469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40290118 40290273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40290378 40290615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40291994 40292036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40293164 40293266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40294181 40294307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40294717 40294803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40301749 40301858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGAAGCTGCACATTTTTTCGAAGGGACGGAGAAACTGCTGGAGGTCTGGTTTTCCAGACAGCAGTCCG
ACGCAAGCCAGGGATCTGGGGATCTTCGTACCATCCCAAGATCTGAATGGGATGTCCTTTTGAAGGATGT
GCAGTGCTCAATCATAAGTGTGACAAAGACTGACAAGCAGGAAGCTTATGTACTCAGTGAGAGTAGCATG
TTTGTCTCCAAGAGACGTTTCATTTTGAAGACATGTGGTACCACCCTCTTACTGAAAGCACTGGTTCCCC
TGTTGAAGCTTGCTAGGGATTACAGTGGGTTTGACTCAATTCAAAGCTTCTTTTATTCTCGTAAGAATTT
CATGAAGCCTTCTCACCAAGGGTACCCACACCGGAATTTCCAGGAAGAAATCGAGTTTCTTAATGCAATT
TTCCCAAATGGAGCAGCATATTGTATGGGACGCATGAATTCTGACTGCTGGTACTTGTATACTTTGGATT
TCCCAGAGAGCCGAGTAATCAGTCAGCCAGATCAAACACTGGAAATTCTGATGAGTGAGCTTGACCCAGC
AGTTATGGACCAGTTCTACATGAAAGATGGTGTTACTGCAAAGGATGTCACTCGTGAGAGTGGAATTCGT
GACCTGATACCAGGTTCTGTCATTGATGCCACACTGTTCAATCCTTGTGGCTACTCGATGAATGGAATGA
AATCGGATGGAACATATTGGACTATTCACATCACTCCAGAACCAGAATTTTCTTATGTTAGCTTTGAAAC
AAACCTAAGTCAGACCTCCTATGACGACCTGATCAGGAAAGTTGTGGAAGTCTTCAAGCCAGGAAAATTT
GTGACCACCTTGTTTGTTAATCAGAGTTCTAAATGTCGCACAGTGCTTTCTTCGCCCCAGAAGATTGACG
GCTTTAAACGTCTTGATTGCCAGAGTGCTATGTTCAACGATTACAATTTTGTTTTTACCAGTTTTGCTAA
GAAACAGCAACAACAGCAGAGTTGA

Translation (334 aa):
MEAAHFFEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSM
FVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAI
FPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIR
DLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKF
VTTLFVNQSSKCRTVLSSPQKIDGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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