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Report for CCDS48508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48508.1 Public Mus musculus 10 Nhsl1 23 108 98 CCDS HistoryNCBI Gene:215819Re-query CCDS DB by CCDS ID:48508.1Re-query CCDS DB by GeneID:215819See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48508.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100054.3 ENSMUSP00000097631.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100054.3Link to Ensembl Protein Viewer:ENSMUSP00000097631.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100054Re-query CCDS DB by Protein ID:ENSMUSP00000097631
Original member NCBI NM_001163592.1 NP_001157064.1 Updated not alive Link to Nucleotide Sequence:NM_001163592.1Link to Protein Sequence:NP_001157064.1Re-query CCDS DB by Nucleotide ID:NM_001163592Re-query CCDS DB by Protein ID:NP_001157064
Current member NCBI NM_001163592.2 NP_001157064.1 Accepted alive Link to Nucleotide Sequence:NM_001163592.2Link to Protein Sequence:NP_001157064.1Re-query CCDS DB by Nucleotide ID:NM_001163592Re-query CCDS DB by Protein ID:NP_001157064Link to BLAST:NP_001157064.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157064.1 1583 Q8CAF4-3 1583 100% 0 0

Chromosomal Locations for CCDS 48508.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 18470108 18470165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18472919 18473071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18498033 18498157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18511550 18511742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18516029 18516160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18523791 18527042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18527536 18527668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18531268 18531973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4752 nt):
ATGGTGGTCTTCATTAATGCAAAGATTAAATCTTTCTTTAAACTTTTTAAAAAGAAAACGGTTTCCAACT
TGGACGAGGAGAGTCGATGGACTGTCCACTACACGGCACCATGGCATCAGCAAGAGAATGTGTTCCTTCC
CGCCACAAGACCCCCCTGTGTTGAGGACCTGCACCGCCAAGCCAAGCTCAACCTCAAATCAGTGCTGAGG
GAATGTGACAAGCTGAGGCAAGATGGCTGCCGAAGTTCTCAGTACTATTCTCAGGGACCCACCTTTGCAG
CCGGCTCCAGCCCCTGCGACGATTATCAAGATGAAGACACAGAAGCAGACCGAAAGTGCTCTCTCTCTTC
ATCTGAAGAAGAAAGATTTATCGGAATCAGGAGACCTAAAACGCCAACCTCAGGTGACTTCTCCGACCTT
CATACTCAGACAAACTGGACCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCC
AGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGGGGAGAATTTCGATCGTCAGGCCAGCCTTCG
GCGGTCTCTAATTTACACAGACACTCTGGTAAGACGACCGAAGAAAGTCAAAAGGAGAAAGACAATTTCA
GGAATCCCTGACATCATTCAGAAGGAGCTAGCATCAGCCACTGGCCAAGATGATGATGGTAGTGCCCATT
CGCTGTACGTCCCAGACCACTACTCTACGTTAGGAAGGCTTGATAGTTATCGGTCCACCGGGCAATGCTT
GGAAACCAGGGACACCAGCTGTCAGACCGAAGACGTGAAGGTCATCCCACCATCAATGAGAAGGATCAGG
GCTCACAAGGGGGTAGGCGTTGCTGCCCAGATGAGCCACCTCTCAGGTTCCTCAGGCAACATGTCTGTGC
TGAGTGACTCAGCCGGTGTTGTGTTCCCATCTCGCCTCAGTAACGATACTGGTTTCCACAGTCTTCCACG
TACCGGCCCGAGAGCAAGCACCTATTCACTGGAGGGAAGGATGGGTGCCCTGGGCTCTACTGAAGATACG
GATGACACTTCTCCCTACCAGGGGGGTAGCTTACAGGGGCATGAAAACTTTGCGCATTTAGGAGGTGCGT
CGAGTACTGGGATGCTTTCGAGGCCCAAATCCCAGCAGTTGAGGTTTTTGGAGAGTCCAGCATGTGTGGT
TTCACCTCATGCAGCCTACTCTACCAGTGTCATCCCAAATGCCACGCTACTGTCCTCTTCAGAGGTTATT
GTCATTCACACTGCTCAGAGTGCAGGACAGCTGGACAGTAGAACACCCGGTTCATCTTCATATTCAAAAA
TAAAACCCAGAGACCGTCCCACACCCAGATGTTCTGTGAAAGATGACCATCAGTCCCCCCGTCATCACTG
GAACGAGGGTCATCTCATTCATTCACGGGCTTTAGCCTCCTCTGTCCCTGGTGCCACCACGCTGTTATCC
CTCCATGATTCAGAGGTCTCTCTAAATGCCCCAGCAAACAGGGAAAATGGATCCCAAGCCATACTCTATC
ATTGTAGAAACAACCCAAGCTTTCCTGACCACCCTTCAGATGTGGATGGCAAGAGCGAGTGTAGTTATTC
GGGGGACAGGGGATGTGGCAGTTCTGAGCCCTGGGAATATAAAACCTCCAGCAATGGGCGGGCATCCCCA
CTGAAGCCACACCTGGCCACTCCTGGTTGCTCTACTCCCACAAGTAACGTGAGCAGCTGCAGTTTGGACC
AAACATCTCTCAAGGGTGATACCAGGTCCCTGTGTTCAGAGGACCATGATGGTTACTATACTACCACTCA
CGAGGCTGGGAACCTGTACACTCTCAGTGATGGCTTGGGGAACCCCAGGCACAGCATGGTCAATGTTTTT
GATGGAAGGGCTCAGAGAAGCCAAGGGGATCAGGCCGCTCACCAGGATAAAATCCTTTCGAGAAACATCT
CTCTGAAGAAAGCAAAGAAACCACCCCTGCCACCATCCCGGACCGATTCTCTGCGAAGGATTCCCAAAAA
GAACAACCAGACAAACGGTCAGGTGCTCAATGAGAGCCTGATCGCCTCGCTCCAGCATTCACTGCAGCTA
AGCCTCCCTGGCAAGGGCGGCAGCTCCCCTTCCCAGAGCCCCTGCAGTGACTTTGAGGAACCCTGGCTCC
CCAGGTCCAGAAGCCAGAGCATTGTTAGCGAGGGTAGTAGCTTGACCTCCACCACCACTCCCAACGTGTA
TTCTCTGTGTGGGGTCACTCCGTCCCAGAGCGACACAAGTAGCGTCAAGTCGGAATACACGGACCCTTGG
GGTTACTACATTGACTACACGAGCTTGCAGGAAGATCCAGGGAACCCCACCGGGGGCTGCTCAGCCAACA
CTGAGGCAGCAACTGGAAACGGGCCAGTACGCCACATCCAGGAGGGGTCGAGAGTCCCAGTGCCCCAAGT
GCCGGGCTGCTCAGTTAGACCAAAGATCGCCTCACCAGAGAAGTCACAGAGAGTCACCTCTCCATCCAGT
GGGTATTCTAGCCAGTCGAATACACCCACAGCACTCACCCCTGTGCCTGTGTTTTTAAAATCAATGTCAC
CAGCAAATGGAAAGGGGAAGGCCAAGCCCAAGGTACCAGAAAGAAAATCGTCTCTGATCTCTTCTATGTC
CATCTCATCATCGTCCACTTCTCTCTCTTCTAATACTTCTACCGAAGGAAGTGGGACCATGAAGAAACTG
GATACAACCCTGGCCTCGGCCCTTGCCCCTCCCCCTCCTCCTCTTCCCCCTCTGCCTTCTCCGTGTCTGG
CAGACAAGTCCCCTTTTCTTCCACCACCTCCTCCTCTAGCAGATTGCTCCGAGGGCTCTCCTCTGCCGCC
CTCTCCCATGTTCCCCCCTCCACCACCAGAAGCCCTTGTTCCCTTCTGCTCCCCCACCGACGGGTGCCTT
TCTCCTTCTCCCACAGCAGTTAGCCCCTCTCTTCCAAGATCCTTGCCTCCTGTGCCAGCACCTCCACCTT
TCTTGCCCTCATCAGAACCCCCGCCCGCTCCGCCTCTGGACCCCAAACTCATGAAAGAAAACAGGCCCTT
TTTCAAAAACTCTAGCCAGTCCGAATCCTCTAGGGAGGCCCTCAGGCGGCCTGCCAACAAGGAGGAGGGC
TGCCGACCCCCCATGCCCCTGATCACCACAGAAGCTTTGCAGATGGTGCAGTTGAGGCCAGTGAGGAAGA
ACTCAGGTGCCGGGGCAGTCCTGTTTTCTGAACCATCAGCTCAGGAACAACGAACTCCGACTGCTCCACA
GTATCACTTAAAGCCATCTGCTTTCCTCAAATCCCGAAATAGCATAAATGAAATGGAGAGTGAAAGCCAG
GCTGCCTCTGTGACGAGCTCGCTTCCGATGCCTGCCAAGAGCCAGAGTCAGGGTGACCATGACAGTGCAG
TAGAGCGTGGCGGCCTTCCGAGCTGCAGCGATGGAGCTCCAGGCCCGGGTCCCAGCCTCAGGACCACTCT
GCTCCCAGACTCTTCACCCAGCAGGAAGCCACCCCCCATCTCTAAGAAGCCCAAACTGTTCCTGGTGGTA
CCACCTCCGCAGAGAGATTTCACAGCGGAGCCCACAGAGAACGGGAGCGAAGCTTTCCCAGGCGTGCCCA
GCCCTACCAGGGCAGAGGGGGAAGCTGTGCGGAGCCAAGAGGAGAAATCCAGCCCAGCATCCCGAGCTGG
CTCTCATGCTACGGCCCCCACCCCCGGCAGTCCGGCTCTAGAACCGGGAACTGCAGGGTCCTTATCCTCT
AGCATTGTGGAAGCCAATGTCCCCATGGTCCAACCTAATACATCACCGGGCCCCACACAGGAAGAGTCAG
GCGAGAACAGTGTGGATGGTGAGAGAAATGCGAAGAGCTGCCTGTCTCAACAGGGCAGAGAAGCTGGCTT
GCTGGAACCCAACACAGCTGCTTCCTCTTCAGACCCCGTGGATGTATCTAAGGAAGAGGGAAGCGATGAG
GTGCTGACTCCGACTAAACCCAGGACAACAGAAGACCTGTTTGCAGCCATTCACAGATCTAAAAGGAAAG
TCCTTGGCCGGAAAGACTCAGAAGACGATCACACTCGAAATCACTCTCCCTCCCCGCCTGTGACACCCAC
GAGTGCTGCCCCTAACCTGGCCTCTCCAAAGCAAGTAGGGTCTATCCAGAGAAGCATAAAAAAGAGCACT
ACCAGCAGTGACAACTTCAAAGCTCTGCTGCTAAAGAAGGGGAGTCGCTCGGACACCAGCGCTCGCATGT
CAGCGGCTGAGATGCTCAAGTCTACGGACCCTCGCTTCCAGAGATCTAGGTCGGAGCCTTCGGCAGACAG
CCCGGACAGCCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAGCTCAGGAAGAGTGGGCCAAGAACGAA
GGCCTGATGCCTCGGAGTCTGTCCTTTTCGGGCCCTCGGTACAGCCGCAGCAGGACGCCACCCTCTGCGG
CCAGCAGCAGGTACAGCATGCGGAACCGCATCCAGAGCAGCCCCATGACCGTCATCTCCGAGGGAGAGGG
AGAACCTGCTGAGCCAGCGGACAACAAAGCACGCAGGGCCCTGGATGCTACCAGGGTGTGCTCTCTGGAC
AGACTGACGGGTCAGGAGATGGACCAGGCCAGCCTCCTCTGTAGCGAGGAGCCTGCCTCTGTGGATGGGA
TAGGAAGGGCTGAGGGCAACGGTCCCTCGGAGCAGTGTGGGGGTACGGAACAGAAGAGTTAG

Translation (1583 aa):
MVVFINAKIKSFFKLFKKKTVSNLDEESRWTVHYTAPWHQQENVFLPATRPPCVEDLHRQAKLNLKSVLR
ECDKLRQDGCRSSQYYSQGPTFAAGSSPCDDYQDEDTEADRKCSLSSSEEERFIGIRRPKTPTSGDFSDL
HTQTNWTKSLPLPTPEEKTRQQAQTVQADVVPINITGENFDRQASLRRSLIYTDTLVRRPKKVKRRKTIS
GIPDIIQKELASATGQDDDGSAHSLYVPDHYSTLGRLDSYRSTGQCLETRDTSCQTEDVKVIPPSMRRIR
AHKGVGVAAQMSHLSGSSGNMSVLSDSAGVVFPSRLSNDTGFHSLPRTGPRASTYSLEGRMGALGSTEDT
DDTSPYQGGSLQGHENFAHLGGASSTGMLSRPKSQQLRFLESPACVVSPHAAYSTSVIPNATLLSSSEVI
VIHTAQSAGQLDSRTPGSSSYSKIKPRDRPTPRCSVKDDHQSPRHHWNEGHLIHSRALASSVPGATTLLS
LHDSEVSLNAPANRENGSQAILYHCRNNPSFPDHPSDVDGKSECSYSGDRGCGSSEPWEYKTSSNGRASP
LKPHLATPGCSTPTSNVSSCSLDQTSLKGDTRSLCSEDHDGYYTTTHEAGNLYTLSDGLGNPRHSMVNVF
DGRAQRSQGDQAAHQDKILSRNISLKKAKKPPLPPSRTDSLRRIPKKNNQTNGQVLNESLIASLQHSLQL
SLPGKGGSSPSQSPCSDFEEPWLPRSRSQSIVSEGSSLTSTTTPNVYSLCGVTPSQSDTSSVKSEYTDPW
GYYIDYTSLQEDPGNPTGGCSANTEAATGNGPVRHIQEGSRVPVPQVPGCSVRPKIASPEKSQRVTSPSS
GYSSQSNTPTALTPVPVFLKSMSPANGKGKAKPKVPERKSSLISSMSISSSSTSLSSNTSTEGSGTMKKL
DTTLASALAPPPPPLPPLPSPCLADKSPFLPPPPPLADCSEGSPLPPSPMFPPPPPEALVPFCSPTDGCL
SPSPTAVSPSLPRSLPPVPAPPPFLPSSEPPPAPPLDPKLMKENRPFFKNSSQSESSREALRRPANKEEG
CRPPMPLITTEALQMVQLRPVRKNSGAGAVLFSEPSAQEQRTPTAPQYHLKPSAFLKSRNSINEMESESQ
AASVTSSLPMPAKSQSQGDHDSAVERGGLPSCSDGAPGPGPSLRTTLLPDSSPSRKPPPISKKPKLFLVV
PPPQRDFTAEPTENGSEAFPGVPSPTRAEGEAVRSQEEKSSPASRAGSHATAPTPGSPALEPGTAGSLSS
SIVEANVPMVQPNTSPGPTQEESGENSVDGERNAKSCLSQQGREAGLLEPNTAASSSDPVDVSKEEGSDE
VLTPTKPRTTEDLFAAIHRSKRKVLGRKDSEDDHTRNHSPSPPVTPTSAAPNLASPKQVGSIQRSIKKST
TSSDNFKALLLKKGSRSDTSARMSAAEMLKSTDPRFQRSRSEPSADSPDSPSSCSPNKNRRAQEEWAKNE
GLMPRSLSFSGPRYSRSRTPPSAASSRYSMRNRIQSSPMTVISEGEGEPAEPADNKARRALDATRVCSLD
RLTGQEMDQASLLCSEEPASVDGIGRAEGNGPSEQCGGTEQKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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