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Report for CCDS48405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48405.1 Public Mus musculus 1 Ralgps2 23 108 98 CCDS HistoryNCBI Gene:78255Re-query CCDS DB by CCDS ID:48405.1Re-query CCDS DB by GeneID:78255See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48405.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172057.7 ENSMUSP00000132533.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172057.7Link to Ensembl Protein Viewer:ENSMUSP00000132533.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172057Re-query CCDS DB by Protein ID:ENSMUSP00000132533
Original member Current member NCBI NM_001159968.1 NP_001153440.1 Accepted alive Link to Nucleotide Sequence:NM_001159968.1Link to Protein Sequence:NP_001153440.1Re-query CCDS DB by Nucleotide ID:NM_001159968Re-query CCDS DB by Protein ID:NP_001153440Link to BLAST:NP_001153440.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153440.1 555 Q9ERD6-2 555 100% 0 0

Chromosomal Locations for CCDS 48405.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156809164 156809193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156811445 156811536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156813438 156813543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156817741 156817833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156819813 156819918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156821387 156821464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156823991 156824045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156828140 156828291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156828972 156829128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156830385 156830452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156832665 156832755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156832895 156833032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156869441 156869567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156884533 156884625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156887091 156887180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156887947 156888030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156900586 156900636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156907639 156907695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGACCTAATGAACGGGCAGGCAAGCAGTGTTACTATCGCAGCCACTGTTTCCGAGGGTCAGATAACAC
TAATGGATGTTCCAGTGTTTAAAGCTATTCAGCCAGATGAACTTTCAAGTTGTGGATGGAATAAAAAAGA
AAAATATAGTTCTGCACCAAATGCAGTTGCTTTCACAAGAAGATTTAATCACGTAAGCTTTTGGGTTGTA
AGAGAGATTCTCCATGCTCAAACACTGAAAATAAGAGCAGAAGTTTTGAGCCACTATATTAAGACTGCTA
AGAAACTATATGAACTTAACAACCTTCACGCACTTATGGCTGTGGTTTCTGGCTTACAGAGTGCGCCGAT
TTTCCGGTTGACTAAGACGTGGGCGTTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAACTAGAATAT
GTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGCAGCTTAAAGATGACTCCTTGCA
TTCCCTATTTAGGCATCTATTTGTCTGACTTGACCTACATTGACTCCGCGTACCCATCCACCGGCAGCAT
TCTAGAAAATGAGCAAAGATCAAATCTGATGAACAACATTCTTCGAATAATTTCTGATTTGCAGCAGTCC
TGTGAATATGATATTCCCATATTGCCTCATGTCCAAAAATACCTGAACTCTGTTCAGTATATAGAAGAAC
TACAAAAGTTTGTGGAAGACGATAATTACAAGCTCTCCTTAAAGATAGAACCAGGAGCAAGTACTCCACG
CTCGGCTGCCTCCAGGGAGGACCTAGCAGGTCCTGACATAGGCGCCTCACCCCAGGGAGGGAGGAAGAGT
AGTGCTGCTGCTGCTGCCGCCGCGGCTGCCGAGGGAGCCTTACTGCCACAGACGCCACCTTCCCCTCGGA
ACCTCATTCCACACGGACACAGGAAGTGCCACAGCCTGGGTTACAATTTCATTCATAAGATGAACACAGC
AGAGTTTAAGAGCGCAACGTTCCCAAACGCAGGGCCACGGCACCTGCTGGATGATAGTGTCATGGAGCCG
CACGCACCGTCGCGAGGCCAGGCTGAGAGCTCTACACTTTCCAGTGGAATATCCATAGGGAGCAGTGATG
GTTCTGAACTAAGCGAAGAGACCTCATGGCCGGCTTTTGAAAGGAACAGATTATACCATTCTCTCGGCCC
GGTGACAAGAGTGCCGCGAAATGGCTATCGAAGCCACACGAAGGCCAGCAGCTCTGCGGAGTCGGAAGAT
TTGGCGGTGCATCTGTACCCCGGAGCTGTTACTATTCAAGGTGTGCTCCGGAGGAAAACCTTGCTAAAAG
AAGGCAAGAAACCCACAGTAGCATCTTGGACAAAGTATTGGGCAGCCTTGTGTGGAACACAGCTTTTTTA
CTATGCCGCCAAATCTCTGAAGGCTACAGAAAGAAAGCATTTCAAATCAACGTCAAATAAGAATGTGTCT
GTGGTGGGCTGGATGGTGATGATGGCTGACGACCCAGAGCATCCAGACCTCTTTCTGCTGACTGACTCCG
AGAAAGGAAATTCATACAAGTTTCAAGCTGGCAGCAGGATGAATGCAATGCTGTGGTTTAAACACTTGAG
CGCGGCCTGCCAGAGTAACAAGCAACAGGTTCCTACAAACTTGATGACTTTTGAGTAA

Translation (555 aa):
MDLMNGQASSVTIAATVSEGQITLMDVPVFKAIQPDELSSCGWNKKEKYSSAPNAVAFTRRFNHVSFWVV
REILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKTTFEKLEY
VMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQS
CEYDIPILPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGASTPRSAASREDLAGPDIGASPQGGRKS
SAAAAAAAAAEGALLPQTPPSPRNLIPHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPRHLLDDSVMEP
HAPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFERNRLYHSLGPVTRVPRNGYRSHTKASSSAESED
LAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWAALCGTQLFYYAAKSLKATERKHFKSTSNKNVS
VVGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGSRMNAMLWFKHLSAACQSNKQQVPTNLMTFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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