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Report for CCDS48351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48351.1 Public Mus musculus 1 Yod1 23 108 98 CCDS HistoryNCBI Gene:226418Re-query CCDS DB by CCDS ID:48351.1Re-query CCDS DB by GeneID:226418See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049813.5 ENSMUSP00000055318.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049813.5Link to Ensembl Protein Viewer:ENSMUSP00000055318.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000049813Re-query CCDS DB by Protein ID:ENSMUSP00000055318
Original member NCBI NM_178691.4 NP_848806.2 Updated not alive Link to Nucleotide Sequence:NM_178691.4Link to Protein Sequence:NP_848806.2Re-query CCDS DB by Nucleotide ID:NM_178691Re-query CCDS DB by Protein ID:NP_848806
Current member NCBI NM_178691.5 NP_848806.2 Accepted alive Link to Nucleotide Sequence:NM_178691.5Link to Protein Sequence:NP_848806.2Re-query CCDS DB by Nucleotide ID:NM_178691Re-query CCDS DB by Protein ID:NP_848806Link to BLAST:NP_848806.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848806.2 343 Q8CB27 343 100% 0 0

Chromosomal Locations for CCDS 48351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 130717484 130717811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130718716 130719419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGTTTGGAGGCGCCAAAGGCGGCCATTTTGGGGTCCCCCCCGCTGGTTACTCCGGCGCTGTCCCCCAGT
CTGAGGCTGGGACCAAGGCTGGCCCCGCAGGAGGCCGGCCGGCCGACACTATGTGGCGGGTCCGCTGCAA
GGCCAAGGGTGGCACCCACCTTTTGCAGGGTCTTTCCAGCCGGACCCGCTTACGGGAGCTGCAGGGCCAA
ATCGCCGCTATCACCGGCATCGCTCCCGGCAGTCAGCGAATCCTCGTTGGCTACCCGCCCGAGTGCCTGG
ATCTCAGCGACCGGGACATCACTCTTGGGGACCTGCCCATCCAGTCAGGTGACATGCTGATTGTTGAAGA
AGACCAAACCAGACCAAAAGCTTCACCTGCGTTTTCAAAATATGGTGCTCCTAGTTATGTCAGGGAAGCT
CTGCCTGTGCTTACCAGAACCGCAGTCCCAGCAGACAACTCTTGCCTCTTTACCAGTGTGTACTATGTCG
TGGAAGGAGGAGTCTTGAATCCAGCTTGTGCCCCTGAGATGAGACGCCTCATAGCACAAATTGTAGCAAG
TGATCCAGTCTTGTATAGTGAGGCGATACTGGGAAAGACAAACGAAGACTACTGTGATTGGATCAGAAGG
GATGATACGTGGGGGGGGGCAATCGAGATCTCAATCCTGTCTAAGTTTTACCAATGTGAAATATGTGTAG
TAGATACACAGACAGTCAGAATTGATCGTTTTGGGGAAGATGCAGGATATACCAAAAGAGTTCTGCTTAT
CTACGATGGCATTCACTACGATCCGCTTCAGCGTAACTTCCCTGATCCAGATACCCCTCCTCTGACCATT
TTCTCCTCAAATGATGATATTGTTCTTGTACAAGCACTGGAATTAGCTGATGAAGCTAGAAGAAAGAGAC
AGTTCACTGATGTAAACCGCTTCACCCTGAGATGCATGATCTGTCAGAAGGGCCTAACCGGACAAGCAGA
AGCAAGGGACCATGCCAGGGAGACAGGCCATACCAACTTTGGAGAGGTGTGA

Translation (343 aa):
MFGGAKGGHFGVPPAGYSGAVPQSEAGTKAGPAGGRPADTMWRVRCKAKGGTHLLQGLSSRTRLRELQGQ
IAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQTRPKASPAFSKYGAPSYVREA
LPVLTRTAVPADNSCLFTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPVLYSEAILGKTNEDYCDWIRR
DDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTI
FSSNDDIVLVQALELADEARRKRQFTDVNRFTLRCMICQKGLTGQAEARDHARETGHTNFGEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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