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Report for CCDS48334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48334.1 Public Mus musculus 1 Relch 23 108 98 CCDS HistoryNCBI Gene:227446Re-query CCDS DB by CCDS ID:48334.1Re-query CCDS DB by GeneID:227446See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190501.6 ENSMUSP00000141162.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190501.6Link to Ensembl Protein Viewer:ENSMUSP00000141162.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190501Re-query CCDS DB by Protein ID:ENSMUSP00000141162
Original member Current member NCBI NM_029349.2 NP_083625.1 Accepted alive Link to Nucleotide Sequence:NM_029349.2Link to Protein Sequence:NP_083625.1Re-query CCDS DB by Nucleotide ID:NM_029349Re-query CCDS DB by Protein ID:NP_083625Link to BLAST:NP_083625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083625.1 1192 Q148V7-2 1192 99.9161% 0 1

Chromosomal Locations for CCDS 48334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 105664108 105664633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105678163 105678252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105687130 105687185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105687282 105687395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105691906 105692109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105692212 105692303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105692884 105693177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105695428 105695503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105696501 105696596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105703931 105704043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105713849 105713939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105716778 105716849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105718775 105718915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105719452 105719616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105721268 105721415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105725649 105725805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105726343 105726466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105727940 105727988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105731201 105731280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105734518 105734624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105735923 105736022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105740435 105740517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105741297 105741360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105743211 105743349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105746069 105746185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105750322 105750410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105750973 105751043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105753503 105753623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3579 nt):
ATGGCGGCGATGGCGCCCGGAGGTGGTGGCAGTGGTAGCGGAGTAAATCCTTTCCTCAGTGATTCGGATG
AGGACGACGACGAGGTAGCGGCAACCGAGGACCGGCGGGCAGGACTTCGGCTGGGTGCCGGGGTCGGCCT
AGATCCTGGTTCTGCAGGCTCCCTGTCGCCACAGGACCCCATGGCCCTGGGAAGCAGCGCGCGGCCGGGG
CTCGCTGTGGAGATGTCCGCCGCCCCGGCGGCTCCGGGGGGCAGCGGGGAGACCCCTGCCCGATTGTCAA
TCGATGCCATCGCCGCTCAGCTGTTGCGCGATCAATACTTGCTGACCGCCCTGGAGCTGCACACCGAGCT
GTTGGAGAGCGGCCGCGAGCTACCACGACTGCGCGATTACTTCTCCAATCCTGGCAACTTCGAGAGGCAG
AGTGGGACCCCCCCAGGGATGGGGGCGCCCGGGATCCCTGGCGCCTCCATCGTCGGAGGCGCTGGAGGTC
GGGAACCGAGTACGACGTCGGGCGGAGGACAGCTCAATCGAGCTGGGAGCATTAGTACTCTTGACTCATT
AGACTTTGCAAGATATTCAGATGATGGTAACAGGGAAACAGATGAAAGAGTGGCGGAACATGAAGTTCCT
TTACAGGAACGAAAAAATTATAAATCAAGTCCTGAAATTCAGGAGCCAATCAAACCTCTTGAAAAGAGAG
CTCTCAACTTCCTAGTCAATGAGTTTTTGTTAAAGAATAACTACAAGCTTACATCAATAACCTTTTCAGA
TGAAAATGATGATCAGGATTTTGAATTATGGGATGATGTAGGATTAAACATTCCCAAACCCCCAGACTTG
TTACAACTTTACCGAGACTTTGGAAATCATCAAGTGACTGGGAAAGATCTTGTGGATGTGGCCAGTGGAG
TAGATGAAGATGAATTAGAGGCTCTTACACCAATTTTAGGCAACGTCCCTCCAACCCTTGATACTCCCCT
GCCTATAGAGAACACCTTGCTAGTACAGAAATTAGAAGATAAAATTAGTTTATTAAATAATGAAAAATGG
TCATTGATGGAGCAAATCAGAAGGCTTGAAAGTGAGATGGACATCCTCAAAGCTGAACACTTTGCCACCC
CAGCAGTTGGTGATTCTGTTCAGCCTTCCTTGGTTTGGTCTTCCCAAAAGGATTCTGAAGACAATAGACA
AAGCCCAGCTGTAAATAGTTCAGACCAGGAAAAAACCAAGGATGTTCATCTTGAAATACCAGATGCAGCT
GATTCCTTTATTCCTAAAGAGAATTCGTCAGGTTCTTTCCCCAGGAAGGAAAGAGAAGAGCTGCCACCTT
CTTCTGTATCAAATAAAACCACGCTCCATTTCGATCAGCCCAATAGGAAATTGTCACCTGCTTTCCACCA
AGCACTACTCTCTTTTTGTCGAATGTCAGCAGATAGTCGGTTAGGATCAGAGGTGTCTAGGATTGCAGAC
AGTGAAAAAAGTGTTATGTTAATGCTGGGACGCTGCCTGCCACACATTGTTCCTAATGTGCTGTTGGCAA
AAAGAGAGGAGTTGATTCCTCTCATATTGTGTACAGCATGCCTGCACCCTGAACCTAAAGAAAGAGACCA
GCTCCTCCATATCCTCTTCAACCTGATCAAGAGGCCAGATGATGAGCAAAGGCAAATGATACTGACAGGA
TGTGTGGCATTTGCACGTCATGTTGGACCAACACGTGTGGAGGCTGAACTTTTACCTCAGTGTTGGGAAC
AGATTAATCACAAATATCCAGAAAGACGACTGCTCGTGGCAGAGTCCTGTGGAGCATTGGCACCTTACCT
TCCTAAAGAAATCCGTAGTTCCCTGGTTCTTTCAATGTTGCAACAGATGTTAATGGAAGATAAGGCTGAT
TTGGTAAGAGAAGCTGTGATTAAAAGCCTGGGTATCATTATGGGCTACATTGATGATCCTGACAAATATC
AACAGGGCTTTGAATTGTTGCTCTCTGCCCTGGGTGATCCCTCAGAAAGAGTTGTTAGTGCAACACACCA
AGTATTTTTACCAGCCTATGCTGCCTGGACAACTGAACTTGGAAACTTACAGTCTCATCTTATACCTACA
CTACTGAACAAGATTGAAAAGCTTCTCAGGGAAGGAGAGCACGGGCTGGACGAACACAAGCTCCACATGT
ATCTTTCTGCCTTGCAGTCCTTGATCCCATCTCTCTTTGCATTAGTGCTACAGAACGCACCTTTCTCCAG
CAAAGCCAAGCTGCATGGTGAAGTACCACATATTGAAGTGACTAGGTTCCCTCGGCCTATGTCACCTCTG
CAAGATGTGTCTACTATTATTGGAAGTCGTGAGCAATTGGCAGTGCTACTACAACTTTATGATTACCAAC
TGGAACATGAAGGCACAACAGGCTGGGAGAGTTTACTCTGGGTTGTCAATCAATTGTTGCCACAGCTTAT
AGAAATAGTGGGCAAAATTAATGTAACCTCAACTGCCTGTGTCCATGAATTCTCCAGATTTTTCTGGCGT
CTTTGCCGGACATTTGGCAAAATTTTTACAAACACTAAGGTAAAACCCCAGTTCCAAGAGATTTTAAGAC
TCTCTGAAGAAAATATTGATTCCTCAGCAGGAAATGGGGTCCTCACTAAAGCTACTGTCCCCATTTATGC
AACAGGAGTCCTCACGTGTTACATTCAGGAAGAGGACCGAAAGCTGTTAGTTGGCTTCTTGGAAGATGTG
ATGACACTGCTTTCACTGTCTCATGCTCCTCTTGACAGCCTGAAGGCTTCTTTTGTGGAACTTGGTGCAA
ACCCGGCCTATCATGAGCTGCTGCTAACTGTTCTGTGGTATGGTGTTGTTCATACTTCTGCACTTGTCAG
GTGTACTGCTGCTAGGATGTTTGAGCTGTTGGTGAAGGGGGTGAATGAGACTCTGGTAGCTCAGAGGGTT
GTTCCTGCTCTCATTACTCTCTCCAGTGACCCTGAAATCTCTGTCAGGATTGCTACAATCCCAGCATTTG
GCACTATTATGGAAACAGTTATTCAGAGAGAGTTGCTAGAAAGAGTGAAGATGCAGTTGGCTTCTTTCCT
GGAAGACCCTCAGTACCAAGACCAGCATTCTTTGCATACAGAGGTCATCCGAACATTTGGCAGAGTCGGG
CCTAATGCAGAACCCCGGTTCCGAGATGAGTTTGTTATACCACATTTACATAAATTAGCCTTGGTGAACA
ACTTACAAATTGTAGATTCGAAAAAACTGGACATTGCGACTCATCTTTTTGAAGCCTACAGTGCACTCTC
CTGTTGTTTCATTTCAGAGGATTTAATGGTAAATCACTTCTTACCTGGCCTCAGATGTTTACGGACTGAC
ATGGAACATCTGTCTCCAGAACATGAGGTTATTTTAAGTTCCATGATAAAAGAATGTGAACAAAAAGTAG
AAAACAAGACTGTCCAAGAGCCTCCAGGCTCAATGTCAATTGCTGCAAGTTTAGTGAGTGAAGACACAAA
GACCAAGTTTTTGAACAAAATGGGCCAGTTGACAACATCAGGTGCCATGCTGGCCAATGTGTTTCAGAGA
AAGAAGTAG

Translation (1192 aa):
MAAMAPGGGGSGSGVNPFLSDSDEDDDEVAATEDRRAGLRLGAGVGLDPGSAGSLSPQDPMALGSSARPG
LAVEMSAAPAAPGGSGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQ
SGTPPGMGAPGIPGASIVGGAGGREPSTTSGGGQLNRAGSISTLDSLDFARYSDDGNRETDERVAEHEVP
LQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPKPPDL
LQLYRDFGNHQVTGKDLVDVASGVDEDELEALTPILGNVPPTLDTPLPIENTLLVQKLEDKISLLNNEKW
SLMEQIRRLESEMDILKAEHFATPAVGDSVQPSLVWSSQKDSEDNRQSPAVNSSDQEKTKDVHLEIPDAA
DSFIPKENSSGSFPRKEREELPPSSVSNKTTLHFDQPNRKLSPAFHQALLSFCRMSADSRLGSEVSRIAD
SEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTG
CVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKAD
LVREAVIKSLGIIMGYIDDPDKYQQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSHLIPT
LLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSKAKLHGEVPHIEVTRFPRPMSPL
QDVSTIIGSREQLAVLLQLYDYQLEHEGTTGWESLLWVVNQLLPQLIEIVGKINVTSTACVHEFSRFFWR
LCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKATVPIYATGVLTCYIQEEDRKLLVGFLEDV
MTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALVRCTAARMFELLVKGVNETLVAQRV
VPALITLSSDPEISVRIATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQHSLHTEVIRTFGRVG
PNAEPRFRDEFVIPHLHKLALVNNLQIVDSKKLDIATHLFEAYSALSCCFISEDLMVNHFLPGLRCLRTD
MEHLSPEHEVILSSMIKECEQKVENKTVQEPPGSMSIAASLVSEDTKTKFLNKMGQLTTSGAMLANVFQR
KK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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