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Report for CCDS48239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48239.1 Public Mus musculus 1 Arid5a 23 108 98 CCDS HistoryNCBI Gene:214855Re-query CCDS DB by CCDS ID:48239.1Re-query CCDS DB by GeneID:214855See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48239.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115032.7 ENSMUSP00000110684.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115032.7Link to Ensembl Protein Viewer:ENSMUSP00000110684.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115032Re-query CCDS DB by Protein ID:ENSMUSP00000110684
Original member Current member NCBI NM_001172205.1 NP_001165676.1 Accepted alive Link to Nucleotide Sequence:NM_001172205.1Link to Protein Sequence:NP_001165676.1Re-query CCDS DB by Nucleotide ID:NM_001172205Re-query CCDS DB by Protein ID:NP_001165676Link to BLAST:NP_001165676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165676.1 590 Q3U108-1 590 100% 0 0

Chromosomal Locations for CCDS 48239.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36307833 36307836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36316209 36316327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36317204 36317324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36317610 36317662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36318084 36318181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36318488 36318653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36318992 36320203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGGCAGCACCTCCGGCCAAAGGGAACACAGAGCAGTCAGAAGAAGGTGACCTCCCGCAGCTTCCTGTAT
CCCCCAAGCCAGATGATGAGCAGAGCAGGAGCCAGAGCCCCACCCAGCTCCAGGACTCCCCTGAGGCAGG
TGGGGAGCAGGAGGAGGAACAGGCCTTCCTGGTCAGCCTCTACAAGTTCATGAAGGAGCGACACACGCCC
ATCGAGAGGGTGCCCCATCTTGGCTTCAAGCAGATTAACCTGTGGAAGATCTACAAGGCAGTGGAGAAGC
TGGGGGCCTATGAGCTGGTGACAGGCCGCCGCCTCTGGAAGAACGTGTATGATGAACTTGGCGGTAGCCC
AGGCAGCACCAGTGCGGCCACATGCACACGCCGCCACTATGAGAGGCTGGTCCTCCCATATGTGCGGCAT
CTGAAGGGGGAGGACGACAAGCCACTGCCTCCTACCAAGCCCAGGAAGCAATACAAGATGGCCAAGGAGC
TGAGGGGAGACGATGGGACCACTGAGAAGCTGAAGAAGGCCAAGGACTCAGAGGAGAGGCGGGTGGAGCA
GACCACGCCAGGAAAGACCAAATCAGATGCCACTGGCCAGACACAGCTTCCCTGCCAGGGATCCTCGAGG
GACAGCACAGAACAGCTGGGCCCAGTATCTGGACCCTCTCCACCACTCACGGGTGCTAGTAGCTGCCCTG
AGGCCTACAAGCGGCTCTTGTCAAGCTTTTACTGCAAAGGGGCGCATGGCATCATGTCACCACTGGCCAA
AAAGAAACTCCTGGCCCAGGTCAGCAAGGCAGAGGCCTTGCAGTGCCAAGAAGAGGGCTGTCGCCATGGA
GCAAGGAGCCCCAACAAGGACATTCAAGACAGTCCCCAGAACCTAAGAGGGCCGGCTGAGAACTCTGAAC
ACCAGCTAACCCCCCGGGAAGGATTGCAGGCCCCTGGTGGGAGCACCAGGATGGAGGCCCAAGTGGGCCC
CTGCCCTACAGCCCCCATGTTCTCAGGCTGTTTTCATGCGTACCCCACCGAGGTGCTGAAACCTGTCAGC
CAGCACCCTAGGGACTTCTTCTCCGGCCTTAAAGACAGGGTGCTGTTGGGACCACCTGGTAAAGAAGAAG
GTCCGACAACCAAAGAGTCCCATCTGGTGTGGGGTGGGGATGCCAACCACCCCTCTGCATTCCATAAAGG
CAGCACAAGAAAAAGAAGTTTCTACCCCAAACCCAAAGCCTGCTGGGTGTCTCCCATGGCCAAGGTCCCT
ACTGAGAGGCCTGGAGCCCCATCCCCTCATCCCAGTAGCCCAGGTCTTGGCAGTAAGCGCGGCTTGGAAG
AAGAGGGATTCGCTCATGGTGGCAAGAAACTGAGGGCAGTGTCTCCCTTTCTGAAGGAGGTGGATTCCAA
GGAGACTGGGGGCAAGCCTGCAGCCCCTGGCTTGGCTGTATCCTGTCTACTGGGCCCAACCCCGGGGCCC
ACTCCTCCAGAGGCCTACAGGGGCACCATGCTGCGGTGTCCTCTAAACTTCACCGGTAGCGCAGACCCTC
TGAAGGGCCAGGCCTCACTCCCCTTCAGCCCCCTGGTCATCCCTGCTTTCCCAGCCCACCTTCTGGCTAC
AACAGGCTCCTCACCTATGGCTGCCAGCCTGATGCATTTCCCTCCCACGCCCTATGACGCTGTCCTACGC
AACAGACTGGGTCCAGCTTCGTCTGCCTGGCACATGCCACCCGTCACAACCTATGCGGCACCTCACTTCT
TCCACCTCAACACCAAACTGTAG

Translation (590 aa):
MAAPPAKGNTEQSEEGDLPQLPVSPKPDDEQSRSQSPTQLQDSPEAGGEQEEEQAFLVSLYKFMKERHTP
IERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRH
LKGEDDKPLPPTKPRKQYKMAKELRGDDGTTEKLKKAKDSEERRVEQTTPGKTKSDATGQTQLPCQGSSR
DSTEQLGPVSGPSPPLTGASSCPEAYKRLLSSFYCKGAHGIMSPLAKKKLLAQVSKAEALQCQEEGCRHG
ARSPNKDIQDSPQNLRGPAENSEHQLTPREGLQAPGGSTRMEAQVGPCPTAPMFSGCFHAYPTEVLKPVS
QHPRDFFSGLKDRVLLGPPGKEEGPTTKESHLVWGGDANHPSAFHKGSTRKRSFYPKPKACWVSPMAKVP
TERPGAPSPHPSSPGLGSKRGLEEEGFAHGGKKLRAVSPFLKEVDSKETGGKPAAPGLAVSCLLGPTPGP
TPPEAYRGTMLRCPLNFTGSADPLKGQASLPFSPLVIPAFPAHLLATTGSSPMAASLMHFPPTPYDAVLR
NRLGPASSAWHMPPVTTYAAPHFFHLNTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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