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Report for CCDS47993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47993.1 Public Homo sapiens 9 NOL8 24 110 108 CCDS HistoryNCBI Gene:55035Re-query CCDS DB by CCDS ID:47993.1Re-query CCDS DB by GeneID:55035See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47993.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000442668.7 ENSP00000401177.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000442668.7Link to Ensembl Protein Viewer:ENSP00000401177.2Re-query CCDS DB by Nucleotide ID:ENST00000442668Re-query CCDS DB by Protein ID:ENSP00000401177
Original member Current member EBI ENST00000545558.5 ENSP00000441140.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545558.5Link to Ensembl Protein Viewer:ENSP00000441140.1Re-query CCDS DB by Nucleotide ID:ENST00000545558Re-query CCDS DB by Protein ID:ENSP00000441140
Original member Current member NCBI NM_017948.6 NP_060418.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017948.6Link to Protein Sequence:NP_060418.4Re-query CCDS DB by Nucleotide ID:NM_017948Re-query CCDS DB by Protein ID:NP_060418Link to BLAST:NP_060418.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060418.4 1167 Q76FK4-1 1167 100% 0 0

Chromosomal Locations for CCDS 47993.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 92297836 92297886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92298257 92298336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92298884 92298954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92299890 92300016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92301551 92301822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92305753 92305830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92306886 92307024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92310171 92310261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92310553 92310675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92311146 92311259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92314267 92316138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92318618 92318686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92319221 92319356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92321668 92321746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92323441 92323503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92324023 92324161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3504 nt):
ATGAAAGTGAACAGAGAAACGAAGCGCCTTTATGTGGGTGGCCTTAGCCAGGACATTTCTGAGGCAGACC
TACAAAATCAGTTCAGCAGATTTGGAGAAGTTTCGGATGTGGAGATCATCACACGGAAAGATGACCAAGG
AAACCCACAGAAAGTTTTTGCATATATCAACATCAGTGTAGCAGAAGCGGACCTGAAAAAATGTATGTCT
GTTTTAAATAAAACAAAATGGAAAGGTGGAACATTACAAATTCAACTAGCAAAAGAAAGCTTTCTGCACA
GATTGGCCCAAGAGAGAGAAGCAGCAAAAGCTAAGAAAGAAGAATCAACAACAGGTAACGCCAACTTGTT
AGAAAAGACAGGAGGAGTGGATTTCCATATGAAAGCTGTGCCAGGGACAGAAGTGCCAGGGCATAAGAAT
TGGGTTGTGAGCAAATTTGGAAGAGTCTTACCTGTTCTTCACCTTAAAAATCAACATAAACGTAAAATCA
TCAAATATGATCCCTCAAAATACTGCCACAACCTGAAGAAGATAGGGGAGGATTTCTCAAACACCATTCC
TATATCCAGCCTGACTTGGGAATTAGAAGGAGGGAATGACCCTATGAGTAAGAAACGGCGAGGAGAGTTC
TCTGACTTTCATGGCCCTCCCAAGAAGATAATAAAAGTGCAGAAGGATGAGAGTTCCACTGGGTCTCTGG
CCATGAGTACAAGGCCCAGGAGGGTAATAGAGAGACCACCCTTAACACAGCAACAGGCTGCACAAAAAAG
AACTTGTGATTCCATTACTCCTTCTAAATCATCTCCTGTACCTGTTTCTGATACTCAGAAACTTAAAAAT
CTACCTTTTAAGACTTCTGGCTTGGAAACTGCCAAGAAGAGAAACAGCATTTCTGATGATGATACTGATT
CTGAAGATGAATTGAGAATGATGATTGCGAAAGAGGAAAACTTACAGAGAACTACACAACCCTCAATAAA
TGAATCTGAAAGTGATCCTTTTGAAGTTGTAAGGGATGATTTCAAATCAGGCGTTCACAAACTGCATTCT
TTAATAGGTTTAGGTATCAAAAATCGTGTCTCTTGCCATGATAGTGATGATGATATTATGAGAAATGATC
GTGAGTATGACTCAGGAGATACAGATGAAATTATTGCGATGAAAAAAAATGTTGCTAAGGTCAAAAACAG
TACAGAATTTTCACAAATGGAAAAATCTACGAAGAAAACTTCTTTCAAAAATAGAGAAAACTGTGAGCTT
TCTGATCACTGTATTAAACTACAAAAAAGAAAAAGCAATGTAGAGTCAGCCCTCAGTCATGGATTAAAGT
CTCTTAATCGTAAATCTCCCTCTCACTCCAGTAGCAGTGAAGATGCTGATTCTGCATCAGAATTAGCTGA
CTCTGAAGGAGGTGAGGAGTATAATGCCATGATGAAAAACTGCCTTCGTGTGAATCTCACTTTAGCTGAT
TTGGAACAATTGGCTGGCAGTGATCTGAAGGTTCCAAATGAAGATACTAAGAGTGATGGACCAGAAACCA
CCACCCAATGCAAGTTTGACAGAGGCTCCAAGAGCCCCAAGACTCCCACTGGCCTCCGCAGAGGCCGACA
GTGTATTCGTCCTGCGGAGATTGTGGCTTCCCTGTTAGAAGGAGAGGAGAACACCTGTGGCAAACAGAAA
CCAAAGGAAAACAATTTAAAGCCAAAATTTCAGGCTTTCAAGGGAGTAGGCTGTCTATATGAAAAGGAGT
CAATGAAAAAATCCTTGAAAGACAGTGTTGCCTCTAACAATAAAGATCAGAATTCCATGAAACATGAGGA
TCCCAGTATCATATCCATGGAAGATGGGTCCCCATATGTTAATGGCTCATTAGGTGAAGTGACTCCATGC
CAACATGCAAAGAAGGCGAATGGCCCAAACTATATTCAGCCTCAAAAAAGACAGACCACTTTTGAAAGCC
AGGATCGCAAGGCAGTGTCCCCTAGCAGTTCTGAAAAGAGAAGTAAGAATCCTATTTCTAGGCCATTAGA
AGGTAAGAAGTCCTTAAGTCTTAGTGCAAAGACTCACAACATAGGCTTTGACAAAGACAGCTGCCATAGT
ACCACAAAGACAGAAGCTTCACAGGAAGAGCGGTCTGATTCAAGCGGCCTCACATCTCTCAAGAAATCAC
CAAAGGTCTCATCCAAGGACACTCGGGAAATCAAAACTGATTTCTCACTTTCTATTAGTAATTCGTCAGA
TGTGAGTGCTAAAGATAAGCATGCTGAAGACAATGAGAAGCGTTTGGCAGCCTTGGAAGCGAGGCAAAAA
GCAAAAGAAGTGCAGAAGAAGCTGGTGCATAATGCTCTGGCAAATTTGGATGGTCATCCAGAGGATAAGC
CAACGCACATCATCTTCGGTTCTGACAGTGAATGTGAAACAGAGGAGACATCGACTCAGGAGCAGAGCCA
TCCAGGAGAGGAATGGGTGAAAGAGTCTATGGGTAAAACATCAGGGAAGCTGTTTGATAGCAGTGATGAT
GACGAATCTGATTCTGAAGATGACAGTAATAGGTTCAAAATTAAACCTCAGTTTGAGGGCAGAGCTGGAC
AGAAGCTCATGGATTTACAGTCGCACTTTGGCACCGATGACAGATTCCGCATGGACTCTCGATTTCTAGA
AACTGACAGTGAAGAGGAACAGGAAGAGGTAAATGAAAAGAAAACTGCTGAGGAAGAAGAGCTTGCTGAA
GAAAAAAAGAAAGCCCTGAATGTTGTACAAAGTGTTTTGCAAATCAACTTAAGCAATTCTACAAACAGAG
GATCAGTAGCTGCTAAGAAATTTAAGGACATCATACATTATGATCCAACGAAGCAAGACCATGCCACTTA
CGAAAGAAAAAGAGATGATAAGCCAAAAGAAAGTAAAGCAAAACGAAAAAAGAAAAGGGAGGAAGCTGAG
AAACTACCTGAGGTGTCTAAAGAAATGTATTATAATATTGCTATGGATCTGAAAGAAATATTCCAAACTA
CAAAATATACCAGTGAAAAGGAAGAGGGCACACCCTGGAATGAGGACTGTGGTAAAGAGAAACCTGAGGA
AATCCAGGACCCTGCAGCTCTGACCAGTGACGCTGAGCAGCCCAGCGGGTTCACGTTCTCTTTTTTTGAT
TCAGACACTAAAGACATAAAGGAAGAGACCTACAGAGTTGAAACAGTGAAACCTGGAAAGATTGTCTGGC
AGGAAGACCCTCGTTTACAAGACAGCAGTTCAGAAGAGGAAGATGTTACTGAAGAAACAGATCACAGAAA
CTCCAGTCCTGGAGAAGCATCATTACTTGAGAAAGAGACCACTAGATTTTTCTTTTTCTCTAAGAATGAT
GAACGACTTCAAGGTTCTGACTTATTCTGGAGAGGAGTAGGAAGTAATATGAGCAGGAACTCTTGGGAGG
CCAGAACAACCAACCTGCGTATGGATTGTCGAAAGAAACATAAAGACGCAAAAAGGAAAATGAAACCAAA
ATAA

Translation (1167 aa):
MKVNRETKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLKKCMS
VLNKTKWKGGTLQIQLAKESFLHRLAQEREAAKAKKEESTTGNANLLEKTGGVDFHMKAVPGTEVPGHKN
WVVSKFGRVLPVLHLKNQHKRKIIKYDPSKYCHNLKKIGEDFSNTIPISSLTWELEGGNDPMSKKRRGEF
SDFHGPPKKIIKVQKDESSTGSLAMSTRPRRVIERPPLTQQQAAQKRTCDSITPSKSSPVPVSDTQKLKN
LPFKTSGLETAKKRNSISDDDTDSEDELRMMIAKEENLQRTTQPSINESESDPFEVVRDDFKSGVHKLHS
LIGLGIKNRVSCHDSDDDIMRNDREYDSGDTDEIIAMKKNVAKVKNSTEFSQMEKSTKKTSFKNRENCEL
SDHCIKLQKRKSNVESALSHGLKSLNRKSPSHSSSSEDADSASELADSEGGEEYNAMMKNCLRVNLTLAD
LEQLAGSDLKVPNEDTKSDGPETTTQCKFDRGSKSPKTPTGLRRGRQCIRPAEIVASLLEGEENTCGKQK
PKENNLKPKFQAFKGVGCLYEKESMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPC
QHAKKANGPNYIQPQKRQTTFESQDRKAVSPSSSEKRSKNPISRPLEGKKSLSLSAKTHNIGFDKDSCHS
TTKTEASQEERSDSSGLTSLKKSPKVSSKDTREIKTDFSLSISNSSDVSAKDKHAEDNEKRLAALEARQK
AKEVQKKLVHNALANLDGHPEDKPTHIIFGSDSECETEETSTQEQSHPGEEWVKESMGKTSGKLFDSSDD
DESDSEDDSNRFKIKPQFEGRAGQKLMDLQSHFGTDDRFRMDSRFLETDSEEEQEEVNEKKTAEEEELAE
EKKKALNVVQSVLQINLSNSTNRGSVAAKKFKDIIHYDPTKQDHATYERKRDDKPKESKAKRKKKREEAE
KLPEVSKEMYYNIAMDLKEIFQTTKYTSEKEEGTPWNEDCGKEKPEEIQDPAALTSDAEQPSGFTFSFFD
SDTKDIKEETYRVETVKPGKIVWQEDPRLQDSSSEEEDVTEETDHRNSSPGEASLLEKETTRFFFFSKND
ERLQGSDLFWRGVGSNMSRNSWEARTTNLRMDCRKKHKDAKRKMKPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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