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Report for CCDS4774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4774.1 Public Homo sapiens 6 RGL2 24 110 108 CCDS HistoryNCBI Gene:5863Re-query CCDS DB by CCDS ID:4774.1Re-query CCDS DB by GeneID:5863See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4774.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000497454.6 ENSP00000420211.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000497454.6Link to Ensembl Protein Viewer:ENSP00000420211.1Re-query CCDS DB by Nucleotide ID:ENST00000497454Re-query CCDS DB by Protein ID:ENSP00000420211
Original member Current member NCBI NM_004761.5 NP_004752.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004761.5Link to Protein Sequence:NP_004752.1Re-query CCDS DB by Nucleotide ID:NM_004761Re-query CCDS DB by Protein ID:NP_004752Link to BLAST:NP_004752.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004752.1 777 O15211-1 777 100% 0 0

Chromosomal Locations for CCDS 4774.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 33292102 33292313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33292430 33292544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33293016 33293306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33293413 33293524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33293604 33293699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33293795 33293916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33294034 33294066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33294688 33294762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33294977 33295045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33295127 33295211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33295319 33295422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33295508 33295759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33296028 33296325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33296414 33296464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33296598 33296776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33297032 33297115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33298455 33298610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGAGCCCCCCCGGGGGAGTCGTACTGAGCAGCTTCC
GAAGCCGGGACCCCGAAGAGGGTGGGGGCCCAGGTGGCCTGGTCGTGGGCGGGGGGCAGGAGGAAGAGGA
GGAGGAAGAAGAAGAGGCCCCTGTGTCCGTCTGGGATGAGGAGGAGGATGGTGCCGTGTTTACCGTCACA
AGCCGCCAATATCGACCTCTTGATCCCTTGGTCCCTATGCCTCCCCCACGTTCCTCCCGACGGCTCCGAG
CTGGCACTCTGGAGGCCCTGGTCAGACACCTACTGGATACCCGGACATCAGGGACTGATGTGAGCTTCAT
GTCAGCCTTCCTGGCTACCCACCGGGCCTTCACCTCCACGCCTGCCTTGCTAGGGCTTATGGCTGACAGG
CTGGAAGCCCTTGAATCTCATCCTACCGACGAACTAGAGAGGACAACAGAGGTAGCCATCTCTGTACTGT
CAACCTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGCCAAGGGTCAGCTTGACCGGCTTGAGAG
CTTCTTACTTCAGACAGGGTATGCAGCAGGGAAGGGTGTTGGGGGGGGCAGCGCTGACCTCATCCGCAAT
CTCCGGTCCCGGGTGGACCCCCAGGCCCCCGACCTTCCTAAGCCCCTGGCCCTCCCCGGCGATCCCCCTG
CTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTAGATGCGGA
ACTTTTTCTCAATTTGATCCCCTCTCAGTGCCTGGGAGGCCTGTGGGGTCACAGAGACCGGCCAGGACAT
TCTCACCTCTGCCCATCTGTCCGAGCTACTGTCACACAGTTTAACAAGGTGGCAGGGGCAGTGGTTAGTT
CTGTCCTGGGGGCTACTTCCACTGGAGAGGGACCTGGGGAGGTGACCATACGGCCACTCCGTCCCCCACA
GAGGGCCCGGCTCCTGGAGAAGTGGATCCGCGTGGCAGAGGAGTGCCGGCTGCTCCGAAACTTCTCTTCA
GTTTATGCCGTGGTGTCAGCCCTGCAGTCCAGCCCCATCCACAGGCTTCGGGCAGCCTGGGGGGAAGCAA
CCAGGGACAGCCTCAGAGTCTTTTCCAGCCTCTGCCAGATTTTCTCCGAGGAGGATAATTATTCCCAGAG
TCGGGAGCTGCTCGTGCAGGAGGTGAAGCTGCAGTCTCCTCTGGAGCCACACTCCAAGAAGGCCCCGAGG
TCTGGCTCCCGGGGTGGGGGTGTGGTCCCATACCTTGGCACCTTCCTGAAGGACCTTGTGATGCTGGATG
CAGCCTCCAAGGATGAGTTGGAGAATGGATACATCAATTTTGACAAGCGGAGGAAGGAGTTTGCAGTCCT
TTCTGAGTTGCGACGGCTCCAGAATGAATGTCGTGGCTATAACCTCCAACCTGACCATGATATCCAGAGG
TGGCTACAGGGGCTCCGGCCACTGACAGAGGCTCAGAGCCATCGTGTATCCTGTGAGGTGGAGCCACCTG
GTTCCAGTGACCCTCCTGCCCCACGGGTGCTTCGGCCAACATTGGTCATCTCGCAGTGGACAGAGGTTTT
GGGCTCTGTTGGGGTCCCTACCCCGCTTGTGTCCTGTGACCGGCCCAGTACTGGGGGAGATGAGGCGCCT
ACAACTCCTGCTCCTCTGCTGACTCGGCTGGCCCAGCACATGAAGTGGCCATCTGTCTCGTCACTAGACT
CTGCCTTGGAAAGCAGTCCATCCCTGCACAGTCCAGCTGACCCCAGCCACCTCTCCCCACCAGCCTCCTC
CCCTAGGCCTTCTCGAGGTCACCGCCGCTCAGCCTCCTGTGGCTCCCCGCTGAGTGGGGGTGCAGAAGAG
GCCTCCGGGGGGACTGGATATGGGGGAGAGGGATCTGGGCCAGGGGCCTCTGATTGCCGTATCATCCGAG
TCCAGATGGAGTTGGGGGAAGATGGCAGTGTCTATAAGAGCATTTTGGTGACAAGCCAGGACAAGGCTCC
AAGTGTCATCAGTCGTGTCCTTAAGAAAAACAATCGTGACTCTGCAGTGGCTTCAGAGTATGAGCTGGTA
CAGCTGCTACCAGGGGAGCGAGAGCTGACTATCCCAGCCTCGGCTAATGTATTCTACGCCATGGATGGAG
CTTCACACGATTTCCTCCTGCGGCAGCGGCGAAGGTCCTCTACTGCTACACCTGGCGTCACCAGTGGCCC
GTCTGCCTCAGGAACTCCTCCGAGTGAGGGAGGAGGGGGCTCCTTTCCCAGGATCAAGGCCACAGGGAGG
AAGATTGCACGGGCACTGTTCTGA

Translation (777 aa):
MLPRPLRLLLDTSPPGGVVLSSFRSRDPEEGGGPGGLVVGGGQEEEEEEEEEAPVSVWDEEEDGAVFTVT
SRQYRPLDPLVPMPPPRSSRRLRAGTLEALVRHLLDTRTSGTDVSFMSAFLATHRAFTSTPALLGLMADR
LEALESHPTDELERTTEVAISVLSTWLASHPEDFGSEAKGQLDRLESFLLQTGYAAGKGVGGGSADLIRN
LRSRVDPQAPDLPKPLALPGDPPADPTDVLVFLADHLAEQLTLLDAELFLNLIPSQCLGGLWGHRDRPGH
SHLCPSVRATVTQFNKVAGAVVSSVLGATSTGEGPGEVTIRPLRPPQRARLLEKWIRVAEECRLLRNFSS
VYAVVSALQSSPIHRLRAAWGEATRDSLRVFSSLCQIFSEEDNYSQSRELLVQEVKLQSPLEPHSKKAPR
SGSRGGGVVPYLGTFLKDLVMLDAASKDELENGYINFDKRRKEFAVLSELRRLQNECRGYNLQPDHDIQR
WLQGLRPLTEAQSHRVSCEVEPPGSSDPPAPRVLRPTLVISQWTEVLGSVGVPTPLVSCDRPSTGGDEAP
TTPAPLLTRLAQHMKWPSVSSLDSALESSPSLHSPADPSHLSPPASSPRPSRGHRRSASCGSPLSGGAEE
ASGGTGYGGEGSGPGASDCRIIRVQMELGEDGSVYKSILVTSQDKAPSVISRVLKKNNRDSAVASEYELV
QLLPGERELTIPASANVFYAMDGASHDFLLRQRRRSSTATPGVTSGPSASGTPPSEGGGGSFPRIKATGR
KIARALF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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