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Report for CCDS47214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47214.1 Public Homo sapiens 5 DEPDC1B 24 110 108 CCDS HistoryNCBI Gene:55789Re-query CCDS DB by CCDS ID:47214.1Re-query CCDS DB by GeneID:55789See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000453022.6 ENSP00000389101.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000453022.6Link to Ensembl Protein Viewer:ENSP00000389101.2Re-query CCDS DB by Nucleotide ID:ENST00000453022Re-query CCDS DB by Protein ID:ENSP00000389101
Original member Current member NCBI NM_001145208.2 NP_001138680.1 Accepted alive Link to Nucleotide Sequence:NM_001145208.2Link to Protein Sequence:NP_001138680.1Re-query CCDS DB by Nucleotide ID:NM_001145208Re-query CCDS DB by Protein ID:NP_001138680Link to BLAST:NP_001138680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138680.1 467 Q8WUY9-2 467 100% 0 0

Chromosomal Locations for CCDS 47214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 60597753 60597914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60603391 60603567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60605690 60605856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60638750 60638890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60642812 60642859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60644745 60644875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60645492 60645619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60647398 60647533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60686962 60687227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60700046 60700093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGAGCATCGCATCGTGGGGCCCGGGCCGTACCGAGCTACCAGGCTGTGGAATGAGACCGTGGAGCTTT
TTCGTGCTAAGATGCCGTTACGGAAACATCGCTGTCGTTTCAAGAGCTATGAGCATTGTTTCACAGCGGC
CGAAGCTGTGGATTGGCTGCATGAGCTGCTGAGGTGCAGTCAAAACTTCGGCCCTGAAGTGACCCGCAAA
CAAACGGTCCAGCTGCTAAAAAAATTCCTGAAGAATCACGTTATTGAAGACATCAAGGGAAAATGGGGTG
AGGAAGATTTTGAAGACAATCGTCACTTATACAGATTTCCTCCTTCTTCACCCCTGAAACCATATCCAAA
GAAGCCCCCAAACCAAAAGGATGTTATTAAATTTCCAGAATGGAATGATCTCCCACCAGGCACTTCACAA
GAGAACATCCCAGTGAGGCCAGTTGTGATGAATTCTGAGATGTGGTACAAGCGTCACAGTATTGCAATTG
GAGAGGTGCCAGCTTGCCGTCTTGTCCACCGCAGACAGCTGACAGAGGCCAATGTAGAAGAGATATGGAA
GTCTATGACATTATCATACTTACAGAAAATTCTTGGCCTGGATTCCTTAGAAGAAGTTTTAGACGTCAAA
CTTGTCAATTCGAAGTTCATCATCCATAATGTATATAGTGTTAGCAAGCAGGGAGTTGTTATTCTTGATG
ACAAGTCAAAAGAACTTCCTCATTGGGTGCTGTCAGCTATGAAGTGTTTGGCAAATTGGCCCAACTGTTC
TGATTTGAAGCAGCCTATGTACTTGGGATTTGAAAAAGATGTCTTTAAAACCATAGCTGATTACTATGGT
CACTTGAAAGAGCCTCTACTTACATTTCATCTTTTTGATGCTTTTGTCAGTGTACTGGGTTTGTTACAGA
AGGAGAAAGTGGCAGTTGAAGCATTTCAGATTTGCTGCCTTCTCCTACCTCCTGAAAATAGGAGAAAGTT
ACAGCTATTGATGAGGATGATGGCAAGGATTTGCTTAAACAAAGAGATGCCACCCCTGTGTGATGGCTTT
GGTACCCGAACACTGATGGTTCAGACATTTTCCCGTTGCATCTTGTGTTCCAAGGATGAAGTGGACTTGG
ATGAGTTATTAGCTGCTAGATTGGTAACGTTTCTGATGGACAATTACCAGGAAATTCTGAAAGTCCCTTT
GGCCTTGCAGACCTCTATAGAGGAGCGTGTGGCTCATCTACGAAGAGTCCAGTTTCAGAAATCCTATCCT
GAAGTCTATCAAGAACGATTTCCTACACCAGAAAGTGCAGCACTTCTGTTTCCTGAAAAACCCAAACCGA
AACCACAGCTGCTAATGTGGGCACTAAAGAAGCCTTTCCAACCATTTCAAAGAACTAGAAGTTTTCGAAT
GTAA

Translation (467 aa):
MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGPEVTRK
QTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPPNQKDVIKFPEWNDLPPGTSQ
ENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEANVEEIWKSMTLSYLQKILGLDSLEEVLDVK
LVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYG
HLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGF
GTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQFQKSYP
EVYQERFPTPESAALLFPEKPKPKPQLLMWALKKPFQPFQRTRSFRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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