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Report for CCDS42806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42806.1 Public Homo sapiens 2 PARD3B 24 110 108 CCDS HistoryNCBI Gene:117583Re-query CCDS DB by CCDS ID:42806.1Re-query CCDS DB by GeneID:117583See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42806.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358768.6 ENSP00000351618.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358768.6Link to Ensembl Protein Viewer:ENSP00000351618.2Re-query CCDS DB by Nucleotide ID:ENST00000358768Re-query CCDS DB by Protein ID:ENSP00000351618
Original member Current member NCBI NM_152526.6 NP_689739.4 Accepted alive Link to Nucleotide Sequence:NM_152526.6Link to Protein Sequence:NP_689739.4Re-query CCDS DB by Nucleotide ID:NM_152526Re-query CCDS DB by Protein ID:NP_689739Link to BLAST:NP_689739.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689739.4 1143 Q8TEW8-2 1143 100% 0 0

Chromosomal Locations for CCDS 42806.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 204546000 204546119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 204686181 204686282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 204965152 204965323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205047581 205047690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205104426 205104514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205113491 205113577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205118921 205119046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205121591 205121949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205124327 205124466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205125609 205125737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205172211 205172381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205176445 205176577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205185764 205185863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205193205 205193320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205245778 205245822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205300530 205300736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205301464 205301701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205401013 205401123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205440370 205440672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205499896 205500031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205553324 205553403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205615456 205615813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3432 nt):
ATGAAAGTGACCGTGTGCTTCGGCAGGACGGGCATCGTGGTGCCCTGCAAGGAGGGCCAGCTGCGCGTCG
GCGAGCTCACCCAGCAGGCGCTGCAGCGGTACCTGAAGACCCGGGAGAAGGGTCCTGGTTACTGGGTGAA
GATTCATCACTTAGAATATACAGATGGAGGAATCCTGGATCCAGATGATGTCTTGGCAGATGTTGTTGAA
GATAAAGACAAGCTGATTGCTGTGTTTGAAGAACAAGAACCACTCCACAAGATTGAGAGCCCCAGTGGAA
ACCCTGCAGATCGGCAGAGCCCAGATGCTTTTGAGACAGAAGTGGCCGCCCAACTGGCCGCATTTAAGCC
AATTGGTGGGGAGATTGAAGTAACCCCTTCTGCTCTAAAACTAGGCACTCCACTGCTGGTGAGGAGAAGC
AGTGACCCAGTGCCAGGCCCACCTGCTGATACCCAGCCAAGCGCTTCACACCCTGGTGGCCAGAGTCTGA
AACTGGTTGTTCCAGATTCCACGCAGAACTTGGAAGACAGAGAAGTTTTGAATGGTGTACAGACAGAACT
ACTAACTTCGCCAAGAACTAAGGACACATTGAGTGATATGACAAGAACAGTGGAGATTTCTGGGGAAGGA
GGCCCATTGGGAATACATGTAGTGCCCTTCTTTTCATCTCTGAGTGGAAGGATTCTAGGACTCTTCATCC
GAGGCATTGAAGACAACAGCAGGTCCAAGCGGGAGGGACTATTTCACGAAAATGAATGTATTGTAAAAAT
CAACAATGTGGATCTCGTAGACAAAACCTTTGCTCAGGCTCAAGATGTCTTCCGCCAGGCAATGAAATCT
CCAAGTGTGCTCCTCCACGTGCTTCCTCCACAAAACCGTGAACAGTATGAAAAGTCAGTCATTGGCTCTC
TTAACATTTTTGGTAATAATGATGGCGTTTTGAAAACCAAAGTGCCGCCTCCTGTCCATGGAAAATCGGG
ACTAAAGACAGCAAATCTCACAGGAACCGATAGTCCTGAAACAGATGCATCAGCTTCCCTGCAACAAAAC
AAGAGTCCCCGAGTACCAAGGCTGGGAGGAAAACCATCCTCTCCCTCACTCTCGCCTCTCATGGGATTTG
GCAGCAATAAAAATGCAAAGAAAATTAAGATTGACCTAAAGAAAGGCCCTGAAGGACTTGGTTTCACTGT
GGTTACCAGAGACTCTTCCATACATGGTCCCGGTCCCATTTTTGTAAAAAACATTTTACCAAAGGGAGCA
GCAATAAAAGATGGCCGCCTACAATCAGGGGACAGAATTTTGGAGGTAAATGGGAGAGATGTCACCGGAC
GAACCCAGGAAGAGCTTGTGGCCATGCTCAGGAGCACCAAGCAGGGGGAGACAGCATCGCTGGTCATTGC
CCGCCAAGAAGGACATTTTCTGCCCCGAGAGTTGGATGGTCGTCTGCGAATGAATGACCAGCTGATTGCA
GTTAATGGGGAATCTCTTTTGGGAAAGTCCAACCACGAAGCTATGGAAACACTTAGGCGGTCAATGTCCA
TGGAGGGAAACATCCGAGGGATGATCCAGTTGGTGATTCTGAGGAGGCCAGAGAGACCAATGGAGGATCC
TGCAGAGTGTGGGGCATTTTCCAAGCCATGCTTTGAGAACTGTCAAAATGCTGTAACCACCTCTAGGCGA
AATGATAATAGTATCCTGCATCCACTTGGCACTTGCAGTCCACAAGACAAACAGAAAGGTCTATTGCTGC
CCAATGACGGATGGGCCGAGAGTGAAGTTCCACCTTCTCCAACACCACATTCTGCTCTGGGATTGGGCCT
CGAAGATTACAGCCACAGCTCTGGGGTGGATTCAGCAGTATATTTTCCAGATCAGCACATCAACTTCAGA
TCTGTGACACCGGCCAGGCAGCCTGAATCAATTAATTTGAAAGCCTCGAAGAGCATGGACCTTGTGCCAG
ATGAAAGCAAGGTTCACTCATTGGCTGGACAAAAATCGGAATCTCCAAGCAAAGATTTTGGTCCAACTCT
GGGTTTGAAAAAGTCCAGCTCCTTGGAGAGTCTGCAGACTGCAGTGGCCGAGGTCAGGAAGAATGACCTT
CCCTTTCACAGGCCCCGGCCGCACATGGTTCGAGGCCGAGGCTGCAATGAGAGCTTTAGAGCAGCCATTG
ACAAATCCTACGATGGACCTGAAGAAATAGAAGCTGACGGTCTGTCTGATAAGAGCTCTCACTCTGGCCA
AGGAGCTCTGAATTGTGAGTCTGCCCCTCAGGGGAATTCGGAGCTAGAGGACATGGAAAATAAAGCCAGG
AAAGTCAAAAAAACGAAAGAGAAGGAGAAGAAAAAGGAAAAGGGCAAATTGAAAGTCAAGGAGAAAAAGC
GCAAAGAGGAGAATGAAGATCCAGAAAGGAAAATAAAGAAGAAGGGCTTCGGCGCCATGCTGAGATTTGG
AAAGAAGAAAGAGGATAAGGGTGGAAAGGCTGAGCAGAAAGGTACTCTGAAACATGGTGGCCTGAGAGAA
GAAGAGCTGGAGAAAATGAAAGAAGAGCGTGAAAGGATTGGAGCAAAACATCAGGAGCTAAGGGAAAAGC
AGGCAAGAGGTCTTCTTGATTATGCTACTGGTGCAATTGGATCAGTGTATGATATGGATGATGATGAAAT
GGACCCCAATTATGCCAGAGTGAACCACTTTCGGGAACCATGCACATCAGCAAATGTCTTTAGATCTCCA
TCTCCCCCTCGAGCTGGACCATTTGGTTACCCTCGGGATGGCCATCCACTGTCTCCAGAAAGAGACCACT
TAGAGGGTCTCTATGCCAAGGTCAACAAGCCATACCATCCACTGGTTCCAGCTGACAGTGGCCGTCCTAC
GGGTGGAAGCACTGACCGTATCCAGAAGTTGCGGAAAGAGTATTATCAGGCTCGGAGGGAAGGTTTCCCT
TTATATGAAGACGACGAAGGAAGAGCAAGGCCATCTGAGTATGACCTACTCTGGGTGCCTGGAAGGGGTC
CAGATGGGAATGCACACAACCTCCGCTTTGAAGGGATGGAGAGGCAGTACGCATCCTTACCCAGGGGAGG
ACCCGCAGATCCTGTAGACTATCTGCCAGCAGCACCTCGGGGGCTCTACAAGGAAAGGGAGCTTCCCTAT
TATCCAGGGGCTCATCCTATGCACCCTCCCAAAGGGAGCTATCCCCGCCCCACAGAGCTCAGGGTGGCAG
ATCTCCGGTATCCTCAGCACTACCCACCCCCGCCAGCTCCCCAGCACAAAGGACCCTTTCGACAAGACGT
TCCGCCTTCCCCTCCCCAGCACCAAAGAATGCCAGCCTATCAGGAAACAGGCAGACCAGGGCCCCGTGGG
GGCAGCCCAGACCAGTACCCTTACCGAACCCAGGATTCCCGGCAGAAGAACCCCATGACTGCAGCCGTAT
AG

Translation (1143 aa):
MKVTVCFGRTGIVVPCKEGQLRVGELTQQALQRYLKTREKGPGYWVKIHHLEYTDGGILDPDDVLADVVE
DKDKLIAVFEEQEPLHKIESPSGNPADRQSPDAFETEVAAQLAAFKPIGGEIEVTPSALKLGTPLLVRRS
SDPVPGPPADTQPSASHPGGQSLKLVVPDSTQNLEDREVLNGVQTELLTSPRTKDTLSDMTRTVEISGEG
GPLGIHVVPFFSSLSGRILGLFIRGIEDNSRSKREGLFHENECIVKINNVDLVDKTFAQAQDVFRQAMKS
PSVLLHVLPPQNREQYEKSVIGSLNIFGNNDGVLKTKVPPPVHGKSGLKTANLTGTDSPETDASASLQQN
KSPRVPRLGGKPSSPSLSPLMGFGSNKNAKKIKIDLKKGPEGLGFTVVTRDSSIHGPGPIFVKNILPKGA
AIKDGRLQSGDRILEVNGRDVTGRTQEELVAMLRSTKQGETASLVIARQEGHFLPRELDGRLRMNDQLIA
VNGESLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRPERPMEDPAECGAFSKPCFENCQNAVTTSRR
NDNSILHPLGTCSPQDKQKGLLLPNDGWAESEVPPSPTPHSALGLGLEDYSHSSGVDSAVYFPDQHINFR
SVTPARQPESINLKASKSMDLVPDESKVHSLAGQKSESPSKDFGPTLGLKKSSSLESLQTAVAEVRKNDL
PFHRPRPHMVRGRGCNESFRAAIDKSYDGPEEIEADGLSDKSSHSGQGALNCESAPQGNSELEDMENKAR
KVKKTKEKEKKKEKGKLKVKEKKRKEENEDPERKIKKKGFGAMLRFGKKKEDKGGKAEQKGTLKHGGLRE
EELEKMKEERERIGAKHQELREKQARGLLDYATGAIGSVYDMDDDEMDPNYARVNHFREPCTSANVFRSP
SPPRAGPFGYPRDGHPLSPERDHLEGLYAKVNKPYHPLVPADSGRPTGGSTDRIQKLRKEYYQARREGFP
LYEDDEGRARPSEYDLLWVPGRGPDGNAHNLRFEGMERQYASLPRGGPADPVDYLPAAPRGLYKERELPY
YPGAHPMHPPKGSYPRPTELRVADLRYPQHYPPPPAPQHKGPFRQDVPPSPPQHQRMPAYQETGRPGPRG
GSPDQYPYRTQDSRQKNPMTAAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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