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Report for CCDS409.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
409.2 Public Homo sapiens 1 OSCP1 24 110 108 CCDS HistoryNCBI Gene:127700Re-query CCDS DB by CCDS ID:409.2Re-query CCDS DB by GeneID:127700See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 409.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data, and by data in PMID:16006562.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 409.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000235532.9 ENSP00000235532.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000235532.9Link to Ensembl Protein Viewer:ENSP00000235532.5Re-query CCDS DB by Nucleotide ID:ENST00000235532Re-query CCDS DB by Protein ID:ENSP00000235532
Original member Current member NCBI NM_145047.5 NP_659484.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145047.5Link to Protein Sequence:NP_659484.4Re-query CCDS DB by Nucleotide ID:NM_145047Re-query CCDS DB by Protein ID:NP_659484Link to BLAST:NP_659484.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659484.4 379 Q8WVF1-3 379 100% 0 0

Chromosomal Locations for CCDS 409.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36418139 36418255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36418991 36419054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36420476 36420615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36422150 36422219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36422768 36422896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36423363 36423466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36431802 36431882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36432422 36432589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36438756 36438910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36450258 36450369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGTCGGTGCGGACGCTACCGCTGCTCTTCTTGAACTTGGGCGGGGAGATGCTTTACATCCTCGACCAAC
GGCTGCGGGCCCAGAACATCCCGGGAGACAAGGCCCGCAAAGTTCTGAATGACATCATCTCCACCATGTT
CAATAGAAAGTTTATGGAGGAATTATTCAAGCCTCAAGAGCTCTACTCCAAGAAGGCCCTGAGGACTGTC
TATGAGCGCCTGGCTCATGCCTCCATTATGAAACTGAACCAGGCCAGCATGGATAAGCTCTATGACCTGA
TGACCATGGCTTTCAAATATCAAGTATTGCTGTGTCCCCGACCCAAGGATGTGCTGCTGGTCACTTTCAA
TCACTTGGATACCATCAAGGGATTCATCCGAGACTCCCCAACCATCCTGCAGCAAGTGGACGAGACTTTG
CGGCAGCTGACAGAAATATATGGTGGTCTCTCTGCAGGGGAGTTCCAGCTGATCCGGCAGACACTCCTCA
TCTTCTTCCAAGACCTGCACATCCGAGTATCCATGTTTCTAAAGGACAAAGTTCAGAATAATAACGGTCG
CTTTGTGTTGCCGGTGTCCGGGCCTGTTCCTTGGGGAACTGAAGTTCCAGGACTCATCAGAATGTTCAAC
AACAAAGGTGAAGAAGTGAAGAGGATAGAATTCAAGCATGGTGGAAACTATGTCCCTGCACCCAAAGAAG
GTTCTTTTGAACTTTATGGAGACCGAGTCCTGAAACTGGGAACTAACATGTACAGCGTGAATCAGCCTGT
GGAAACTCATGTGTCTGGATCATCAAAGAACTTAGCCTCATGGACCCAGGAAAGCATTGCTCCAAACCCT
CTTGCTAAAGAAGAGCTGAATTTCTTGGCCAGGCTGATGGGAGGGATGGAGATTAAGAAACCCAGTGGCC
CTGAGCCCGGATTCCGGTTGAATCTCTTTACCACCGATGAAGAAGAGGAACAAGCAGCGCTAACCAGGCC
AGAAGAGTTATCCTATGAAGTTATCAACATACAAGCCACCCAGGACCAGCAACGGAGCGAGGAGCTGGCT
CGAATCATGGGGGAGTTTGAGATCACGGAGCAGCCAAGGCTGAGCACCAGCAAAGGGGACGATTTGCTCG
CCATGATGGATGAGTTATAG

Translation (379 aa):
MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARKVLNDIISTMFNRKFMEELFKPQELYSKKALRTV
YERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDSPTILQQVDETL
RQLTEIYGGLSAGEFQLIRQTLLIFFQDLHIRVSMFLKDKVQNNNGRFVLPVSGPVPWGTEVPGLIRMFN
NKGEEVKRIEFKHGGNYVPAPKEGSFELYGDRVLKLGTNMYSVNQPVETHVSGSSKNLASWTQESIAPNP
LAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELA
RIMGEFEITEQPRLSTSKGDDLLAMMDEL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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