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Report for CCDS39782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39782.1 Public Mus musculus 7 Meis3 23 108 98 CCDS HistoryNCBI Gene:17537Re-query CCDS DB by CCDS ID:39782.1Re-query CCDS DB by GeneID:17537See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39782.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002495.17 ENSMUSP00000002495.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002495.17Link to Ensembl Protein Viewer:ENSMUSP00000002495.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000002495Re-query CCDS DB by Protein ID:ENSMUSP00000002495
Original member NCBI NM_001302472.1 NP_001289401.1 Updated not alive Link to Nucleotide Sequence:NM_001302472.1Link to Protein Sequence:NP_001289401.1Re-query CCDS DB by Nucleotide ID:NM_001302472Re-query CCDS DB by Protein ID:NP_001289401
Current member NCBI NM_001302472.2 NP_001289401.1 Accepted alive Link to Nucleotide Sequence:NM_001302472.2Link to Protein Sequence:NP_001289401.1Re-query CCDS DB by Nucleotide ID:NM_001302472Re-query CCDS DB by Protein ID:NP_001289401Link to BLAST:NP_001289401.1
Original member NCBI NM_008627.4 NP_032653.2 Updated not alive Link to Nucleotide Sequence:NM_008627.4Link to Protein Sequence:NP_032653.2Re-query CCDS DB by Nucleotide ID:NM_008627Re-query CCDS DB by Protein ID:NP_032653
Current member NCBI NM_008627.5 NP_032653.2 Accepted alive Link to Nucleotide Sequence:NM_008627.5Link to Protein Sequence:NP_032653.2Re-query CCDS DB by Nucleotide ID:NM_008627Re-query CCDS DB by Protein ID:NP_032653Link to BLAST:NP_032653.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289401.1 378 P97368-1 378 100% 0 0
NP_032653.2 378 P97368-1 378 100% 0 0

Chromosomal Locations for CCDS 39782.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16175556 16175567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16177392 16177573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16177709 16177868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16177961 16178011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16178745 16178795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16178951 16179100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16182041 16182152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16182320 16182468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16183791 16183867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16184038 16184096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16184635 16184718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16185448 16185497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGGCCCGGAGGTATGATGAGCTGCGCCACTACCCAGGCATTACAGAGCACACGACAGCCCTGGCCAGCT
TTTCAGAGGCAGCGCCTTCAGTACCTAGAGCCCCTGGGCCCTACACCCCACACCGGCCACCCCAGCTCCA
AGCTCCAGGCTTGGACAGCGACAGCTTGAAGAGAGAGAAGGATGACATCTATGGACACCCCCTCTTCCCA
CTCTTGGCCCTGGTCTTTGAGAAGTGTGAGCTGGCTACATGCTCGCCCCGTGATGGGGCCTCGGCTGGGC
TGGGTTCACCCCCAGGTGGTGACGTCTGCTCCTCTGACTCCTTCAATGAGGATATTGCTGCCTTTGCTAA
GCAGATCCGCTCCGAGAGGCCGCTGTTCTCTTCCAACCCGGAGCTGGACAACCTGATGGTCCAGGCCATC
CAGGTACTCCGGTTCCACCTGCTGGAGCTGGAGAAGGTCCACGACCTGTGCGACAACTTCTGTCACCGCT
ACATCACCTGCCTCAAGGGGAAGATGCCCATAGACCTGGTGATTGAGGATCGGGATGGTAGTTGCAGGGA
GGATCTTGAGGACTACGCAGCCTCCTGCCCCAGCCTCCCAGACCAGAATACTACATGGATCAGAGACCAT
GAGGACAGTGGGTCTGTACATTTGGGGACCCCAGGTCCATCCAGCGGAGGCCTGGCCTCCCAGAGTGGGG
ACAACTCAAGTGACCAAGGAGATGGGCTGGACACAAGCGTAGCCTCTCCCAGCTCCGCAGGAGAGGATGA
GGACCTGGACCTGGAACGCAGACGGAACAAGAAGAGGGGGATCTTTCCCAAAGTGGCCACCAACATCATG
AGGGCCTGGTTGTTCCAGCATCTCTCGCACCCGTACCCTTCAGAAGAGCAAAAGAAACAGCTGGCCCAGG
ACACAGGGCTCACCATCCTGCAGGTGAACAACTGGTTTATTAATGCCCGGAGACGAATAGTGCAGCCCAT
GATTGACCAGTCTAATCGCACAGGGCAGGGTGCATCTTTCAACCCTGAGGGCCAGCCCATGGCAGGCTTC
ACAGAGACTCAGCCACAAGTGACAGTCAGGACACCAGGATCAATGGGGATGAACCTGAACTTAGAAGGAG
AGTGGCATTACCTATAG

Translation (378 aa):
MARRYDELRHYPGITEHTTALASFSEAAPSVPRAPGPYTPHRPPQLQAPGLDSDSLKREKDDIYGHPLFP
LLALVFEKCELATCSPRDGASAGLGSPPGGDVCSSDSFNEDIAAFAKQIRSERPLFSSNPELDNLMVQAI
QVLRFHLLELEKVHDLCDNFCHRYITCLKGKMPIDLVIEDRDGSCREDLEDYAASCPSLPDQNTTWIRDH
EDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSAGEDEDLDLERRRNKKRGIFPKVATNIM
RAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQGASFNPEGQPMAGF
TETQPQVTVRTPGSMGMNLNLEGEWHYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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