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Report for CCDS39080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39080.1 Public Mus musculus 5 Cc2d2a 23 108 98 CCDS HistoryNCBI Gene:231214Re-query CCDS DB by CCDS ID:39080.1Re-query CCDS DB by GeneID:231214See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39080.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048150.14 ENSMUSP00000048320.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048150.14Link to Ensembl Protein Viewer:ENSMUSP00000048320.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048150Re-query CCDS DB by Protein ID:ENSMUSP00000048320
Original member Current member NCBI NM_172274.2 NP_758478.1 Accepted alive Link to Nucleotide Sequence:NM_172274.2Link to Protein Sequence:NP_758478.1Re-query CCDS DB by Nucleotide ID:NM_172274Re-query CCDS DB by Protein ID:NP_758478Link to BLAST:NP_758478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758478.1 1633 Q8CFW7-1 1633 100% 0 0

Chromosomal Locations for CCDS 39080.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43668668 43668706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43671221 43671304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43673692 43673815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43681289 43681377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43681699 43681803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43683100 43683201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43684040 43684213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43685258 43685420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43688124 43688260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43688918 43689049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43695085 43695294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43696526 43696632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43699939 43700079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43703191 43703347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43703861 43704102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43706057 43706234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43706743 43706899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43709044 43709191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43710505 43710643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43712240 43712443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43714509 43714601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43715754 43715845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43716937 43716951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43718553 43718720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43720341 43720446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43722389 43722498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43723701 43723797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43724274 43724372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43726196 43726372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43728271 43728291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43729857 43730060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43732378 43732467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43733828 43733941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43735316 43735450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43736034 43736156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43737496 43737554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43739298 43739475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43740666 43740854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4902 nt):
ATGAATACCAACGACGAAAAAATGAAAATAATTTCAGAGGACTTCACTGGAGATGGTGTGGACACAGAGG
CGGGAAGACGGAAGAAGAATTCAAAGGTGCGAAGACAGCAGAGAAAGAAAAAGCCACCCGCCTCTCCCCC
TGAGGAAATGGTGTCAGACAAATTCCAAGATGGTGGGCAGCAGGAAGTGGTGGAGGAAGAGCCCGAGACC
AACCTCCTGAGCTTGACAGCCCGGCGGGGGCCCCGGAGCTTACCTCCCATCCCTTCAGCTTCTAGAACCG
GCTTTGCAGAATTTTCCATGAGGGAACGAATGAGGGAGAAACTTCAGGCTGCAAGGTCCAAGGCAGAAAG
CGCATTGTTGCGGGATGTCCCCACCCCTAGACCCAGGCGCCTGCGCAGTCCCTCCAGAGAGAAGGAAACA
GAGACTGAATTTGGCACAGAGCCAAGTACAGAGGTGCAAGACACTCAAAAAGAAGACGACACAAAGAGTT
ATTCAAGAATTAAGTTCCGTGATTCTGTACGAAAAATTAAGTCAAAACCCCAGCTCCCTCCTGGTTTCCC
ATCTGCAGAAGAGGCCTATAATTTCTTTACGTTCAACTTTGATCCTGAGCCAGAGGAATCAGAGGAAAAA
TCACCAGTAAAAGGTGGAGAGAGAGCTCATCATGAGGACCAAGAAGGAGAAGAAGGAACACAAGCTCAAG
AGAGAGCGAAGAAAACGGAAGAGGAAGAGCTGCTTAATGGGAAGGATGCTGAAGACTTCCTGTTGGGCTT
AGATCCCACGGCCCATGACTTCGTGGCAGTCAGAGCTGCAGAGTACAAGAGTGCCCGCATTCAGCTGCAG
AAGGAGAAAGAAATCCTCTTCACGCCTAGTCGGCTGACAGTGCCGACCTATAAAAAGCTTCCTGAGAACA
TACAGCCAAGATTCCTGGAAGATGAAGGTCTTTACATCGGGGCCAGACCAGAGGTGGCACGCACCAATGA
GAACATCATGGAGAACCGACTGCTGATACAGGAGCCTGGGAGTAAGTGGTTCGGAGATGATGGCAGAATC
CTGGCACTGCCCAGCCCCATCAAGCCGTTTCCCTCAAGGCCATCACTAACCACACGGGAGCAAAGCCCCA
AGGCTGGACTGGAGACTTTGTACAAGAAGGCAGAGAAGTATGTCCACAGTAGACAGCATATGATTGGATC
TGGAGACCCTCCAGGAAATTTCCAACTGGACATCGATATTTCTGGCTTAATCTTCACTCATCACCCCTGT
TTTAGCCGAGAGCATGTCTTGGCATCAAAGCTGGCCCAGTTGTATGACCAGTACCTTGCAAGACAGCAAA
GAAATAAGACGAAATTCCTTACAGATAAGCTTCAAGCACTAAGAAAAGCTGTTCAGACCAGTCTTAACCC
AGAGAAACCTCATCAGTCTCTTGACACAACCCAGAAAACCATCAATGAGTATAAATCTGAAATTCGGCAG
ACTCGAAAACTGCGAGATGCTGAACAAGAGAAAGATCGAACACTGCTGAAGACCATCATAAAGGTCTGGA
AAGAGATGAAGTCATTACGGGAGTTCCAGAGGTTTACAAACACGCCGTTGAAGCTCGTCTTGAGAAAGGA
AAAAGTTGACCCGAAACTAGATGAGGATGCATATGAAGCCGAGATTCAAGCTGAGATCCATGAACTGCTG
GAGGAACACATGGAGGAATATGCAACAAAGATGGAAGAGTACAGAACATCTCATCAGCAATGGAAAGCCT
GGAGGAAAGCCCAGAGGGCCAAAAAGAAGAAAAAGAAGCAAACAACAGAGGAACACCTCGAGGAGGAAGA
GGCTGAGGAGTCCTTCCCTGAGGAAGAGGTTACTAAGCCCATTCCCCCAGAGCCCACTGACCCAGCTGTC
ATAGAGCAGCAGGTGCGGGAGAGAGCAGCCCACAGCAGGAGGAGGCCAGGGGAGCCCACACTCATTCCAG
AGTTGAGTCTGGCAGGGAATGTGACCCCCAATGACCAGTGTCCTAGGGTGGAGGTCTCCAGAAGGGAAGA
TGTCAGGAGGCGCTCTGTATACTTAAAGGTGGTCTTCAACAGCAAAGAGGTGTCGAGGACTGTTAGCCGG
CCTCTAGGGGCAGATTTCCGGGTTCACTTTGGACAGATTTTCAACCTGCAGATATTCAACTGGCCAGAGA
GCTTAATGCTTCAGGTCTATGAAACTATTGGTCATAGTGGTACCACCTTGCTAGCTGAGGTCTTCCTGCC
TATCCCTGAGACGACCCTTGTCACGGGAAGGGCCCCCATTGAAGAGGTGGAGTTCAGCAGTAACCAGCAT
GTGACATTAGACCATGAGGGAGTTGGAAGTGGGGTGCCCTTCTCCTTCGAAGCTGATGGCAGCAATCAAC
TGACTCTAATGACATCAGGGAAAGTGTCCCACAGTGTGGCATGGGCCGTTGGGGAAAATGGGATTCCTTT
AATTCCTCCACTGTCACAGCAGAACATTGGATTTCGAAGTGCTTTGAGGAGGGCAGATGCCATCTCATCC
ATTGGCACATCAGGGCTGACGGACATGAAGAAGTTGGCCAAGTGGGCAGCAGAGTCCAAGCTTGACCCCA
ATGATCCCAACCACGCCCCATTGATGCAGCTGATCTCGGTTGCTACCAGTGGTGAATCCTATGTCCCTGA
CTTCTTCCGGCTGGAGCAGCTGCAGCAGGAATTCAACTTCGTCTCAGAGGAGGAATTAAATAGATCCAAA
CGGTTCCGACTTCTCCATCTTAGGAGCCAAGAGGTGCCAGAATTCCGGAACTATAAACAAATTCCAGCAT
ATGACCGAGAAATTATGGAAAAGGTATTCCAGGACTATGAGAAACGATTACGAGACAGAAATGTAATTGA
AACCAAGGACCACCTGGACATGCACAGAGCCACAGTAGCCAAGTACCTTCAGCAAGTTAGAGAAGCAGTG
GTAAATCGCTTCCTAACTGCCAAACACCATTTTCTTCTTACTGATTTGGTAGTAGAAGAAGAAGTCCCCA
ATATCAGTTCTGAAGGCTCGGGCATTTTGGGCCTAAGCCTTTTCAAGCTGGCAGAACAAAAGCGACCACT
GAGGCCACGGAGGAAAGGTCGGAAGAAGGTGACAGCCCAAAACCTGTCTGATGGAGACATAAAGCTGCTG
GTGAACATTATCCGGGCTTACGACATCCCTGTAAGGAAACCTGTAGTGAGCAAGTTTCAGCAGCCATCGA
GATCTTCAAGAACTTTCAGTGAAAAGCAAACTGCTTCCCCCAGCACACACAGCCCACTACACAACGCTGA
CTACCCCCTCGGCCAGGTCTTAGTCCGGCCTTTTGTGGAGGTCTCTTTTCAAAGAACAATTTGCCACACA
ACCACAGCTGAAGGACCAAATCCCAGCTGGAACGAAGAACTTGAACTTCCGTTCAGGGCCCCCAATGGGG
ACTACAGCACAGCCAGCTTACAGTCAGTGAAGGATGACGTATACATTAACATTTTTGATGAAGTGCTGTA
TGATATCCTAGAGGATGACCGTGAAAGAGGAAGTGGGATCCATACGCGTATTGAGAGACACTGGTTAGGA
TGTGTGAAAATCCCATTTAGCACCATCTATTTCCAGGCAAGGATTGATGGCACATTTAAAATAGACATTC
CTCCAGTTCTCCTGGGCTATAGTAAGGAGCGAAACATTATTATGGAACGAGCCTTTGATTCTGCCCGAAG
CTTGAGTGAAGGCTCCTACATCACCCTGTTTATTACCATTGAGCCTCAGCTGGTTCCTGGGGAGCCTATG
AGAGAAAAGATGAGTGACATGCTTAAGAAGTTTGATACCCAGGAAGATGAGAAATTACTTCAAGCAACAG
AGAAATTTCAAGCTGAATGTGCCTTAAAATTCCCCCAGCGTCAGTGCCTCACCACAGTGACTGACATGAC
CGGGAAAACGGTTTTTATTACGCGTTATCTCAAGCCTTTAAACCCTCCGCAGGAGCTCCTTCACGTCTAC
CCCAACAACCCGCAGGCCACTGCGGAGCTGGTAGCTCGGTATGTGTCCTTGATCCCTTTCTTGCCTGATA
GCGTGTCGTTTGCTGGAGTCTGTGACCTGTGGAGCACTTCTGATCAATTCCTTGACCTCCTGGCGGGTGA
TGAAGAAGAGCATGCAGTACTGCTATGCAATTACTTTCTGTTCCTGGGTAAGAAGGCATGGCTGGTGATG
GGCAGTGCGATTCCTGAGGGTCCAACTGCCTATGTGCTAACTTGGGAGAAAAATTATTATTTAATATGGA
ATCCCTGCAGCGGACATTGTTACGGACAATTTGATGCATTTTGCCCTTTGAAAAGTGTGGGCTGTTTAAT
TGGTCCTGATAATATTTGGTTTAATATTCAACACCATGATTCTCCACTAAGGATAAATTTTGATGTCACA
AAGCCCAAACTATGGAAATCTTTTTTTTCACGAAGTCTTCCATATCCTGGCCTATCCAGTGTTCAGCCGG
AAGAGCTAATTTATCAACACACAGACAAAGCAGTAGCTGCTGAACTGCAAGACAGGATTGAAAAAATACT
AAAAGAAAAAATCATGGACTGGAGGCCACGCCACCTGACCAGGTGGAACAGGTACTGTACCTCCACCCTG
CGCCACTTCTTGCCTCTACTGGAAAGAAGTCAAGGAGAAGATATAGAAGACGACCACAGGGCAGAGCTGT
TGAAGCAGCTGGGGGACTACAGGTTCTCTGGATTTCCTCTTCACATGCCTTATTCTGAAGTGAAGCCTTT
GGTTGAAGCGGTGTATAGCACTGGAGTACATAACATTGACCTTCCTAATGTTGAGTTTGCTTTAGCTGTA
TACATACACCCTTATCCCAAAAACGTTTTGTCTGTTTGGATCTATGTTGCTTCTCTTGTACGGAACAGGT
AA

Translation (1633 aa):
MNTNDEKMKIISEDFTGDGVDTEAGRRKKNSKVRRQQRKKKPPASPPEEMVSDKFQDGGQQEVVEEEPET
NLLSLTARRGPRSLPPIPSASRTGFAEFSMRERMREKLQAARSKAESALLRDVPTPRPRRLRSPSREKET
ETEFGTEPSTEVQDTQKEDDTKSYSRIKFRDSVRKIKSKPQLPPGFPSAEEAYNFFTFNFDPEPEESEEK
SPVKGGERAHHEDQEGEEGTQAQERAKKTEEEELLNGKDAEDFLLGLDPTAHDFVAVRAAEYKSARIQLQ
KEKEILFTPSRLTVPTYKKLPENIQPRFLEDEGLYIGARPEVARTNENIMENRLLIQEPGSKWFGDDGRI
LALPSPIKPFPSRPSLTTREQSPKAGLETLYKKAEKYVHSRQHMIGSGDPPGNFQLDIDISGLIFTHHPC
FSREHVLASKLAQLYDQYLARQQRNKTKFLTDKLQALRKAVQTSLNPEKPHQSLDTTQKTINEYKSEIRQ
TRKLRDAEQEKDRTLLKTIIKVWKEMKSLREFQRFTNTPLKLVLRKEKVDPKLDEDAYEAEIQAEIHELL
EEHMEEYATKMEEYRTSHQQWKAWRKAQRAKKKKKKQTTEEHLEEEEAEESFPEEEVTKPIPPEPTDPAV
IEQQVRERAAHSRRRPGEPTLIPELSLAGNVTPNDQCPRVEVSRREDVRRRSVYLKVVFNSKEVSRTVSR
PLGADFRVHFGQIFNLQIFNWPESLMLQVYETIGHSGTTLLAEVFLPIPETTLVTGRAPIEEVEFSSNQH
VTLDHEGVGSGVPFSFEADGSNQLTLMTSGKVSHSVAWAVGENGIPLIPPLSQQNIGFRSALRRADAISS
IGTSGLTDMKKLAKWAAESKLDPNDPNHAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSEEELNRSK
RFRLLHLRSQEVPEFRNYKQIPAYDREIMEKVFQDYEKRLRDRNVIETKDHLDMHRATVAKYLQQVREAV
VNRFLTAKHHFLLTDLVVEEEVPNISSEGSGILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLSDGDIKLL
VNIIRAYDIPVRKPVVSKFQQPSRSSRTFSEKQTASPSTHSPLHNADYPLGQVLVRPFVEVSFQRTICHT
TTAEGPNPSWNEELELPFRAPNGDYSTASLQSVKDDVYINIFDEVLYDILEDDRERGSGIHTRIERHWLG
CVKIPFSTIYFQARIDGTFKIDIPPVLLGYSKERNIIMERAFDSARSLSEGSYITLFITIEPQLVPGEPM
REKMSDMLKKFDTQEDEKLLQATEKFQAECALKFPQRQCLTTVTDMTGKTVFITRYLKPLNPPQELLHVY
PNNPQATAELVARYVSLIPFLPDSVSFAGVCDLWSTSDQFLDLLAGDEEEHAVLLCNYFLFLGKKAWLVM
GSAIPEGPTAYVLTWEKNYYLIWNPCSGHCYGQFDAFCPLKSVGCLIGPDNIWFNIQHHDSPLRINFDVT
KPKLWKSFFSRSLPYPGLSSVQPEELIYQHTDKAVAAELQDRIEKILKEKIMDWRPRHLTRWNRYCTSTL
RHFLPLLERSQGEDIEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLVEAVYSTGVHNIDLPNVEFALAV
YIHPYPKNVLSVWIYVASLVRNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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