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Report for CCDS38789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38789.1 Public Mus musculus 4 Frmd3 23 108 98 CCDS HistoryNCBI Gene:242506Re-query CCDS DB by CCDS ID:38789.1Re-query CCDS DB by GeneID:242506See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084474.5 ENSMUSP00000081514.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084474.5Link to Ensembl Protein Viewer:ENSMUSP00000081514.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084474Re-query CCDS DB by Protein ID:ENSMUSP00000081514
Original member NCBI NM_172869.4 NP_766457.1 Updated not alive Link to Nucleotide Sequence:NM_172869.4Link to Protein Sequence:NP_766457.1Re-query CCDS DB by Nucleotide ID:NM_172869Re-query CCDS DB by Protein ID:NP_766457
Current member NCBI NM_172869.5 NP_766457.1 Accepted alive Link to Nucleotide Sequence:NM_172869.5Link to Protein Sequence:NP_766457.1Re-query CCDS DB by Nucleotide ID:NM_172869Re-query CCDS DB by Protein ID:NP_766457Link to BLAST:NP_766457.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766457.1 595 Q8BHD4-1 595 100% 0 0

Chromosomal Locations for CCDS 38789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 74013770 74013916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74074045 74074149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74098102 74098144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74119799 74119877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74128199 74128296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74135828 74135951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74145034 74145121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74153567 74153655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74159244 74159307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74160367 74160455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74161699 74161773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74162049 74162117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74170638 74170762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74187314 74187906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGTTCGCTTCTTGTCACTGTGCGCCGAGAGGCAGAAGGACTATGAAGATGATTCACTTTCGGAGCTCCA
GTATCAAATCGCTCAACCAGGAGATGAAATGCACCATTCGACTGCTGGACGACTCGGAGGTCTCCTGCCA
TATCCAGAGGGAAACGAAAGGGCAGTTTCTCATTGAATACATCTGCAACTACTATAGCCTGCTGGAAAAG
GACTACTTTGGAATTCGCTATGTGGACCCAGAGAAGCAAAGGCACTGGCTTGAGCCTAACAAGTCCATCT
TCAAGCAAATGAAATCTCATCCACCATACACCATGTGCTTTAGAGTGAAATTCTACCCACATGAACCCTT
GAAGATTAAAGAAGAGCTCACAAGGTACCTATTATATTTGCAAATTAAAAGAGACATTTTTCATGGTCGA
CTGCTGTGTTCCTTTTCTGATGCTGCCTATCTGGGTGCTTGTATCGTTCAAGCTGAGTTTGGTGATTACT
ATCCTGATGAGCATCCTGAGAATTATATCAGTGAGTTTGAGATTTTTCCCAAGCAGTCACAGAAATTGGA
AAGAAAAATCATGGAAATTCATAACAACGAACTAAGAGGTCAGAGCCCAGCAATTGCTGAATTCAACTTA
CTCTTAAAAGCTCATACATTGGAAACTTATGGAGTGGATCCTCACCCATGCAAGGATTCAAGAGGTGCTA
CAGCATTTTTAGGATTCACTGCTGCAGGTTTCGTCGTATTCCAGGGAAATAAAAGAATCCATTTGAGAAA
ATGGTCAGATGTCTGCAAATTGAAGTTTGAAGGGAAGACATTTTACGTGATTGGTTCCCAGAAAGAGAAA
AATGCTGTTTTGGCATTCCATACATCAACACCAGCTGCCTGCAAACATTTATGGAAATGTGGGGTAGAAA
ACCAAGCCTTTTATAAGTATGCAAAGTCCAGTCAGATCAAGACTGTGTCAAGCAGCAAGATATTTTTTAA
AGGAAGTAGATTTCGATACAGTGGTAAAGTTGCTAAAGAGGTGGTAGAGGCAAGCTCCAAAATCCAGAGG
GATCCTCCTGAAGTGCATAGAGTCAACATTACTCAGAGTCGCAGCTTTCACTCCTTGAACAAACAGCTCA
TCATCAACATGGAACCTTTGCAGCCCCTGCTTCCTTCCCCCACTGAACAGGAAGAAGAAGTTCCTGTGGG
TGAGGGTGTCCCACTGCCTAAAATGGATGTGTCTGAGCCCCTAATTGCCAGCTCACCAGTGAAGGGAGCA
CAGTGTGCAGATCCTCCAGATGAAGAGGAAGATAGAGTAAAAGAAGACCCCTTGACCATCTCTGAACTAG
CGTACAATCCCAGCGCCAGCCTGCTTCCTACCCCAGTGGATGATGATGAAATCAACATGCTCTTTGACTG
TCCATCCAGGCTTGAGTTAGAAAGAGAAGACACGGATTCATTTGAGGAACTTGAAGCAGATGAAAATGCT
TTTTTGATTGCTGAAGAGGAGGAGCTGAAGGAAGCTCGCCAAGCTTTGTCATGGAGCTATTCAATCCTGA
CCGGCCATATCTGGGTCAACCCCCTGGTCAAGAGTTTCTCCAGGCTCCTTGTGGTGGGCCTGGGACTGCT
GCTGTTTGTATTTCCCCTGCTCCTCCTCCTTTTGGAGTCAGGTATTGATCTCTCCTTCTTATGCGAAATC
CGTCAGACACCAGAGTTTGAGCAGTTTCACTATGAATACTATTGTCCTCTGAAGGAGTGGGTGGCTGGGA
AGGTCAACATCGTCCTCTACATGCTGGGTTGTTCATAA

Translation (595 aa):
MFASCHCAPRGRRTMKMIHFRSSSIKSLNQEMKCTIRLLDDSEVSCHIQRETKGQFLIEYICNYYSLLEK
DYFGIRYVDPEKQRHWLEPNKSIFKQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGR
LLCSFSDAAYLGACIVQAEFGDYYPDEHPENYISEFEIFPKQSQKLERKIMEIHNNELRGQSPAIAEFNL
LLKAHTLETYGVDPHPCKDSRGATAFLGFTAAGFVVFQGNKRIHLRKWSDVCKLKFEGKTFYVIGSQKEK
NAVLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYSGKVAKEVVEASSKIQR
DPPEVHRVNITQSRSFHSLNKQLIINMEPLQPLLPSPTEQEEEVPVGEGVPLPKMDVSEPLIASSPVKGA
QCADPPDEEEDRVKEDPLTISELAYNPSASLLPTPVDDDEINMLFDCPSRLELEREDTDSFEELEADENA
FLIAEEEELKEARQALSWSYSILTGHIWVNPLVKSFSRLLVVGLGLLLFVFPLLLLLLESGIDLSFLCEI
RQTPEFEQFHYEYYCPLKEWVAGKVNIVLYMLGCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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