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Report for CCDS38775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38775.1 Public Mus musculus 4 Rnf183 23 108 98 CCDS HistoryNCBI Gene:76072Re-query CCDS DB by CCDS ID:38775.1Re-query CCDS DB by GeneID:76072See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079420.6 ENSMUSP00000078389.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079420.6Link to Ensembl Protein Viewer:ENSMUSP00000078389.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079420Re-query CCDS DB by Protein ID:ENSMUSP00000078389
Original member Current member EBI ENSMUST00000107454.1 ENSMUSP00000103078.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107454.1Link to Ensembl Protein Viewer:ENSMUSP00000103078.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107454Re-query CCDS DB by Protein ID:ENSMUSP00000103078
Original member Current member EBI ENSMUST00000107455.7 ENSMUSP00000103079.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107455.7Link to Ensembl Protein Viewer:ENSMUSP00000103079.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107455Re-query CCDS DB by Protein ID:ENSMUSP00000103079
Original member Current member NCBI NM_153504.4 NP_705724.1 Accepted alive Link to Nucleotide Sequence:NM_153504.4Link to Protein Sequence:NP_705724.1Re-query CCDS DB by Nucleotide ID:NM_153504Re-query CCDS DB by Protein ID:NP_705724Link to BLAST:NP_705724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705724.1 190 Q8QZS5 190 100% 0 0

Chromosomal Locations for CCDS 38775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62427987 62428559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGAGCGAACCACAGGGCCAGGAGCTCAGAGCCGAGTGCCCTGTCTGCTGGAACCCTTTCAACAACACAT
TCCACACCCCCAAAGTGCTAGACTGCTGTCACTCCTTCTGTGTGGAATGCCTGGCCCACCTCAGCCTGGT
AACCCCAGCCAGGCGCCGCTTGCTCTGCCCACTCTGTCGTCAGCCCACCGTGCTGGCTTCAGGGCAGCCA
GTCACTGACTTGCCTACAGACACTGCCATGCTGACCCTGCTCCGCCTAGAGCCCCACCATGTCATCCTAG
AGGGCCACCAGCTCTGTCTCAAGGACCAGCCCAAGAGCCGCTACTTCCTGCGTCAGCCTCGGGTCTACAC
CCTGGACCTTGGCGCTGAGCCTGGGAGCCAGACTGGGCTCCCTCAGGACACAGCCCCTGACACCAGGCCG
GTGCCCATCCCCAGTCACTACTCTCTCAGAGAGTGTGTCCGCAACCCTCACTTCCGGATCTTCGCCTATC
TGATGGCTGTCATCCTCAGTGTCACCCTGCTGCTCATCTTCTCCATCTTTTGGACTAAGCAGTTCTTTTG
GGGCATGGGGTGA

Translation (190 aa):
MSEPQGQELRAECPVCWNPFNNTFHTPKVLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQP
VTDLPTDTAMLTLLRLEPHHVILEGHQLCLKDQPKSRYFLRQPRVYTLDLGAEPGSQTGLPQDTAPDTRP
VPIPSHYSLRECVRNPHFRIFAYLMAVILSVTLLLIFSIFWTKQFFWGMG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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