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Report for CCDS38672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38672.1 Public Mus musculus 3 Fubp1 23 108 98 CCDS HistoryNCBI Gene:51886Re-query CCDS DB by CCDS ID:38672.1Re-query CCDS DB by GeneID:51886See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106121.5 ENSMUSP00000101727.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106121.5Link to Ensembl Protein Viewer:ENSMUSP00000101727.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106121Re-query CCDS DB by Protein ID:ENSMUSP00000101727
Original member Current member EBI ENSMUST00000166984.7 ENSMUSP00000130145.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166984.7Link to Ensembl Protein Viewer:ENSMUSP00000130145.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166984Re-query CCDS DB by Protein ID:ENSMUSP00000130145
Original member Current member EBI ENSMUST00000200452.4 ENSMUSP00000143019.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200452.4Link to Ensembl Protein Viewer:ENSMUSP00000143019.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200452Re-query CCDS DB by Protein ID:ENSMUSP00000143019
Original member NCBI NM_057172.4 NP_476513.2 Updated not alive Link to Nucleotide Sequence:NM_057172.4Link to Protein Sequence:NP_476513.2Re-query CCDS DB by Nucleotide ID:NM_057172Re-query CCDS DB by Protein ID:NP_476513
Current member NCBI NM_057172.5 NP_476513.2 Accepted alive Link to Nucleotide Sequence:NM_057172.5Link to Protein Sequence:NP_476513.2Re-query CCDS DB by Nucleotide ID:NM_057172Re-query CCDS DB by Protein ID:NP_476513Link to BLAST:NP_476513.2

Chromosomal Locations for CCDS 38672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152210593 152210700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152213977 152214067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152215592 152215630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152217409 152217448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152217835 152217884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152217976 152218047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152218213 152218270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152219684 152219846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152219933 152220031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152220136 152220237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152220465 152220567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152220686 152220786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152221267 152221408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152222084 152222244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152222829 152222980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152223286 152223365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152226080 152226217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152228171 152228245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152231877 152232022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152232395 152232403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGGCCGACTACTCCACAGTGCCTCCGCCGTCGTCTGGCTCGGCTGGCGGCGGCGGCGGCGGAGTCGTTA
ACGACGCTTTCAAAGATGCCCTGCAGAGAGCGCGGCAGATTGCAGCAAAAATTGGGGGTGATGCTGGTAC
ATCATTGAATTCAAATGACTATGGTTATGGGGGACAAAAAAGACCCTTAGAAGATGGAGATCAGCCAGAT
GCTAAGAAAGTACCTCCCCAAAATGACTCTTTTGGAGCACAGTTACCTCCAATGCATCAGCAGCAAAGAT
CTGTAATGACAGAAGAATACAAAGTCCCAGATGGGATGGTCGGATTTATAATTGGCAGAGGAGGTGAACA
GATCTCACGAATACAGCAGGAATCTGGATGCAAGATACAGATAGCACCTGATAGTGGTGGCCTACCAGAA
AGGTCTTGTATGCTAACTGGAACACCTGAATCTGTCCAATCAGCAAAAAGATTATTGGACCAGATTGTTG
AAAAGGGAAGACCAGCCCCTGGCTTTCATCATGGTGATGGACCTGGAAATGCAGTTCAGGAAATCATGAT
TCCAGCCAGCAAAGCAGGACTAGTTATTGGAAAGGGGGGCGAGACTATTAAACAACTTCAGGAACGGGCT
GGTGTTAAAATGGTAATGATTCAAGATGGGCCTCAAAACACTGGTGCTGATAAACCTCTTAGGATTACGG
GTGACCCATACAAAGTTCAGCAAGCCAAGGAAATGGTATTAGAGTTAATTCGTGATCAAGGTGGTTTCAG
AGAAGTGCGGAATGAGTATGGCTCAAGAATAGGAGGCAATGAAGGGATAGATGTCCCAATTCCAAGATTT
GCTGTTGGCATTGTAATAGGAAGAAATGGAGAAATGATTAAAAAAATACAAAATGATGCTGGTGTTCGAA
TTCAGTTTAAGCCAGATGATGGAACAACACCTGATAGGATAGCACAGATAACAGGACCTCCAGACAGGTG
TCAGCACGCTGCAGAAATAATCACAGACCTTCTACGAAGTGTTCAGGCTGGCAATCCTGGTGGACCGGGA
CCTGGTGGTCGAGGACGAGGTAGAGGTCAAGGAAACTGGAATATGGGGCCCCCGGGTGGACTCCAGGAGT
TTAATTTCATTGTGCCAACTGGGAAAACTGGACTGATCATTGGAAAAGGAGGTGAAACCATAAAAAGCAT
AAGCCAACAGTCTGGTGCAAGAATAGAACTGCAGAGAAGCCCTCCACCTAATGCAGATCCCAATATGAAG
TTATTTACAATTCGGGGCACTCCACAGCAAATAGACTATGCTCGACAACTCATAGAAGAGAAGATTGGGG
GCCCAGTAAATCCTTTAGGGCCACCTGTACCCCATGGGCCCCATGGGGTTCCAGGTCCTCATGGGCCTCC
TGGACCTCCAGGGCCGGGAACTCCAATGGGACCATACAACCCTGCACCTTACAATCCAGGACCACCTGGC
CCAGCTCCTCACGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCGTATCCACATTGGCAGC
AACAGGCTCCTCCTGACCCAGCCAAGGCAGGAGCAGATCCAAACTCGGCAGCTTGGGCTGCTTATTATGC
TCACTATTACCAGCAGCAGGCACAACCCCCACCTGCAGCTCCTGCCGGTGCACCAGCTACAACCCAAACG
AACGGACAAGGTAACTACGGAGATCAGCAGGCTCCAGCTCCAGCTGGACAGGTTGATTATACAAAGGCTT
GGGAAGAATACTACAAGAAAATGGGTCAAGCAGTTCCTGCTCCTGCTGGGGCCCCACCAGGTGGTCAGCC
GGATTATAGTGCAGCCTGGGCTGAGTACTATAGACAGCAAGCAGCGTATTATGCCCAGACAAGTCCCCAG
GGGATGCCGCAGCATCCTCCAGCACCTCAGGGCCAATAA

Translation (642 aa):
MADYSTVPPPSSGSAGGGGGGVVNDAFKDALQRARQIAAKIGGDAGTSLNSNDYGYGGQKRPLEDGDQPD
AKKVPPQNDSFGAQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPE
RSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERA
GVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPIPRF
AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPG
PGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMK
LFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPG
PAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKAGADPNSAAWAAYYAHYYQQQAQPPPAAPAGAPATTQT
NGQGNYGDQQAPAPAGQVDYTKAWEEYYKKMGQAVPAPAGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQ
GMPQHPPAPQGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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