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Report for CCDS38665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38665.1 Public Mus musculus 3 Ssx2ip 23 108 98 CCDS HistoryNCBI Gene:99167Re-query CCDS DB by CCDS ID:38665.1Re-query CCDS DB by GeneID:99167See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106153.8 ENSMUSP00000101759.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106153.8Link to Ensembl Protein Viewer:ENSMUSP00000101759.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106153Re-query CCDS DB by Protein ID:ENSMUSP00000101759
Original member Current member NCBI NM_001355661.1 NP_001342590.1 Accepted alive Link to Nucleotide Sequence:NM_001355661.1Link to Protein Sequence:NP_001342590.1Re-query CCDS DB by Nucleotide ID:NM_001355661Re-query CCDS DB by Protein ID:NP_001342590Link to BLAST:NP_001342590.1
Original member Current member NCBI NM_138744.4 NP_620083.1 Accepted alive Link to Nucleotide Sequence:NM_138744.4Link to Protein Sequence:NP_620083.1Re-query CCDS DB by Nucleotide ID:NM_138744Re-query CCDS DB by Protein ID:NP_620083Link to BLAST:NP_620083.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342590.1 615 Q8VC66 615 100% 0 0
NP_620083.1 615 Q8VC66 615 100% 0 0

Chromosomal Locations for CCDS 38665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146417748 146417790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146418275 146418444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146419135 146419347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146422896 146423006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146426323 146426458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146427825 146427900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146427987 146428167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146430929 146431079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146432481 146432617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146432973 146433146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146436543 146436657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146437176 146437341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146438656 146438830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGGAGATTGGATGACTGTGACAGATCCAGTTCTGTGTACAGAAAACAAAAATCTCTCTCAATATACCT
CAGAAACAAAGATGTCTCCGTCCAGTTTGTACTCCCAGCAAGTTCTGTGCTCTTCAGTACCTTTATCCAA
AAACGTGCATGGTGTTTTCGGTGTCTTCTGCACAGGAGAGAACATTGAACAAAGTATTTCCTATCTTGAT
CAGGAGCTGACCACCTTCGGGTTTCCTTCCTTGTATGAAGAATCCAAAAGTAAAGAGGCAAAGAGAGAAT
TAAATATAGTCGCTGTTCTGAACTGTATGAACGAGCTGCTCGTGCTTCAGCGGAAGAACCTGCTGGCCCA
GGAGAGCGTGGAGACACAGAACTTGAAGCTGGGCAGTGACATGGACCACCTGCAGAGCTGCTACGCCAAA
CTTAAGGAGCAGTTGGAAACGTCCAGGCGGGAGATGATCGGGCTTCAAGAGAGAGACAGGCAGCTGCAGT
GCAAGAACAGGAGTTTGCATCAGCTCCTGAAGAATGAGAAAGATGAGGTACAAAAATTACAAAATATCAT
AGCCAGCCGGGCTACTCAGTATAATCATGATGTGAAGAGGAAGGAGCGTGAATATAATAAGCTAAAGGAG
CGCCTGCATCAGCTCGTTATGAACAAGAAGGATAAAAACATAGCCATGGATGTTTTAAATTATGTGGGTC
GAGCTGATGGCAAACGAGGCTCATGGAGGACTGACAAAACAGAAGCCAGGAATGAAGATGAGATGTACAA
AATTCTGTTGAATGATTATGAGTACCGCCAGAAGCAGATCCTGATGGAGAACGCGGAGCTGAAGAAGGTC
CTCCAGCAGATGAAGAAGGAGATGATCTCTCTCCTGTCTCCTCAGAAGAAGAAGCCCAGGGAAAGAGCAG
AGGACGGCACAGGCACTGTTGCTATCTCCGATATAGAAGATGACTCTGGGGAACTGAGCAGAGACAGCGT
GTGGGGCCTTTCCTGTGACACTGTGAGAGAGCAGCTGACAAACAGCATCAGGAAACAGTGGAGAATTTTG
AAAAGTCATGTAGAAAAACTCGATAACCAAGCTTCGAAGGTACACTCAGAGGGCCTTAATGAGGAGGACG
TCATCTCACGACAAGACCATGAGCAAGAGACTGAGAAACTGGAGCTGGAGATTGAGCGGTGTAAAGAGAT
GATCAAGGCTCAGCAGCAGCTCTTACAGCAGCAGCTGGCCACCACGTGTGATGATGACACCACCTCACTG
TTGCGAGACTGTTACTTGCTGGAAGAAAAGGAACGCCTTAAAGAAGAGTGGACCCTTTTTAAAGAGCAAA
AAAAGAATTTTGAGAGAGAAAGGCGAAGCTTTACAGAAGCTGCCATTCGATTGGGGTTGGAGAGAAAGGC
GTTTGAAGAAGAGCGAGCCAGCTGGGTAAAGCAGCAGTTTTTAAACATGACGAACTTTGACCACCAGAAC
TCAGAAAATGTGAAACTTTTCAGTGCCTTCTCAGGAAGTTCTGATCCAGACAATCTTATAGTCCACTCAC
GGCCACGGCAAAAGAAGCTACACAGTGTGGCTAATGGGGTGCCAGCTTGCACATCAAAACTGACTAAATC
TCTTCCTGCCTCACCTTCTACTTCAGACTTTCGCCAGACACATTCATGTGTGTCTGAACACAGTTCCATC
AGTGTGCTGAATATAACTCCTGAAGAAAGTAAACCAAGTGAGGTTGCAAGAGAAAGCACGGATCAGAAGT
GGAGCGTGCAGTCGAGGCCCAGCTCGCGGGAGGGGTGCTACAGCGGATGCTCCTCGGCCTTCAGGAGCGC
TCACGGGGACCGAGATGACTTACCTTAA

Translation (615 aa):
MGDWMTVTDPVLCTENKNLSQYTSETKMSPSSLYSQQVLCSSVPLSKNVHGVFGVFCTGENIEQSISYLD
QELTTFGFPSLYEESKSKEAKRELNIVAVLNCMNELLVLQRKNLLAQESVETQNLKLGSDMDHLQSCYAK
LKEQLETSRREMIGLQERDRQLQCKNRSLHQLLKNEKDEVQKLQNIIASRATQYNHDVKRKEREYNKLKE
RLHQLVMNKKDKNIAMDVLNYVGRADGKRGSWRTDKTEARNEDEMYKILLNDYEYRQKQILMENAELKKV
LQQMKKEMISLLSPQKKKPRERAEDGTGTVAISDIEDDSGELSRDSVWGLSCDTVREQLTNSIRKQWRIL
KSHVEKLDNQASKVHSEGLNEEDVISRQDHEQETEKLELEIERCKEMIKAQQQLLQQQLATTCDDDTTSL
LRDCYLLEEKERLKEEWTLFKEQKKNFERERRSFTEAAIRLGLERKAFEEERASWVKQQFLNMTNFDHQN
SENVKLFSAFSGSSDPDNLIVHSRPRQKKLHSVANGVPACTSKLTKSLPASPSTSDFRQTHSCVSEHSSI
SVLNITPEESKPSEVARESTDQKWSVQSRPSSREGCYSGCSSAFRSAHGDRDDLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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