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Report for CCDS38579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38579.1 Public Mus musculus 3 Mov10 23 108 98 CCDS HistoryNCBI Gene:17454Re-query CCDS DB by CCDS ID:38579.1Re-query CCDS DB by GeneID:17454See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38579.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168015.7 ENSMUSP00000128246.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168015.7Link to Ensembl Protein Viewer:ENSMUSP00000128246.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168015Re-query CCDS DB by Protein ID:ENSMUSP00000128246
Original member NCBI NM_001163441.1 NP_001156913.1 Updated not alive Link to Nucleotide Sequence:NM_001163441.1Link to Protein Sequence:NP_001156913.1Re-query CCDS DB by Nucleotide ID:NM_001163441Re-query CCDS DB by Protein ID:NP_001156913
Current member NCBI NM_001163441.2 NP_001156913.1 Accepted alive Link to Nucleotide Sequence:NM_001163441.2Link to Protein Sequence:NP_001156913.1Re-query CCDS DB by Nucleotide ID:NM_001163441Re-query CCDS DB by Protein ID:NP_001156913Link to BLAST:NP_001156913.1
Original member NCBI NM_008619.2 NP_032645.2 Updated not alive Link to Nucleotide Sequence:NM_008619.2Link to Protein Sequence:NP_032645.2Re-query CCDS DB by Nucleotide ID:NM_008619Re-query CCDS DB by Protein ID:NP_032645
Current member NCBI NM_008619.3 NP_032645.2 Accepted alive Link to Nucleotide Sequence:NM_008619.3Link to Protein Sequence:NP_032645.2Re-query CCDS DB by Nucleotide ID:NM_008619Re-query CCDS DB by Protein ID:NP_032645Link to BLAST:NP_032645.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156913.1 1004 P23249 1004 100% 0 0
NP_032645.2 1004 P23249 1004 100% 0 0

Chromosomal Locations for CCDS 38579.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 104795149 104795240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104795325 104795446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104795694 104795782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104795860 104795985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104796767 104796841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104796970 104797161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104797275 104797392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104799392 104799608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104799698 104799795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104799946 104800049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104800275 104800433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104800687 104800834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104800957 104801133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104801398 104801552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104802426 104802594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104802793 104802927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104804131 104804392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104804478 104804713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104804904 104805107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104817936 104818072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3015 nt):
ATGCCTAGCAAGTTCAGCTGCCGAAAGCTCCGGGAGACCGGCCAGAGGTTCGAGAGTTTTCTGGCCGAAC
GTGGACTGGACCTGGAGACAGATCGTGAGCGGCTGCGGACGATTTACAACCACGACTTCAAGCCCAGCTA
TGGGACCCCTGCCCCTGGCTTCTCCTCCATGCTGTATGGAATGAAGATCGCAAATCTGGCCTTCGTCACC
AAGACTCGGGTCAGGTTCTTCAAACTAGACCGCTGGGCTGATGTGCAGTTACCAGAAAAGAGGCGAATAA
AGCCAGGGTCGAACATCAGCAAACAACACAGATCACTGTTGGCCAGGATCTTTCACGACAGGGCTGAGTA
CCTTCATGGGAAGCATGGGGTAGACGTGGAGGTCCAGGGGCCCCATGAAGCCCGAGACGGGCAACTCCTT
ATCCACCTGGATTTGAACCGCAAGGAGGTACTAACCCTACGGCTTCGGAACGGCGGAAGCAAACCTGTCA
CCCTCACTCACCTATTCCCACTGTGCTGGACGCCCCAGTTTGTCTTCTACCATGGAGAACAGGACCTGCC
CTGCCCACTGGGCCCCGGTGAAAGCTATGAACTCCACATCTACTGTAAGACCAGCATTGTGGGTTACTTC
CCAGCCACTGTCCTCTGGGAACTCCTGGGACCCGGGGAGTCGGGAGCAGAAGGAGCAGAAACTTTCTACA
TTGCCCGATTCCTGGCGGCTGTCGCCCACAGTCCCCTGGCTGCCCAGTTGAAACCCACAACTCCCTTCAA
ACGCCCCCCTCGGCTCACCAGAAACTCTGTGTTGACCAACCGGATCGAGGAAGGAGAGAGGCCCGACCGA
GCCAAGGGCTATGAACTAGAGCTAAGTTTGGCCCTGGGGACCTATTACCCACCCATCCTCCTCCGACAAC
TGCTCCCTACCCTTCTTCAGGGACCAAGTATCTTCACTGCCCCAAAGGAGGTTGCTGAGATCAAGGCCCA
GCTGGAGACAACCCTGAAATCCAGGAACTATGAGGTGAAACTCCGGCTGCTGCTGCACCTGGAAGAGCTG
CAGATGGAGCATGACATCCGGCACTATGACCTGGACTCGGTACCCATGACCTGGGACCCTGTGGACCAGA
ATCCCAGGCTGCTCACCCTGGAGGTTCCTGGTGTCGCAGAGAGCCGTCCCTCAGTGCTACGAGGTGACCA
CCTTTTTGCCCTTTTGTCCTCTGAGACCCAACAGGACGACCCTGTCACCTACAAGGGTTTCGTGCACAAG
GTGGAACTGGACCGTGTCAAGCTGAGCTTTTCTACAAGCCTCCTGAGCCGATTTGTGGATGGGCTGACCT
TCAAGGTGAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCAGCACCGGGCCCTAGAGTTGACGGGGCG
CTGGGTGCTATGGCCCATGCTTTTTCCTGTGGCCTCCCGTGGGGTCTCGTTGCTGCCCTCAGATGTGAAG
TTCAAGCTGTACGATCGGAGTCTGGAGTCAAACCCTGAGCAACTGCAGGCCATGAAGCACATTGTGAGGG
GTACCACCCGGCCTGCCCCCTACATCATCTTTGGGCCTCCAGGTACCGGCAAGACTGTCACATTAGTGGA
GGCCATCAAACAGGTAGTGAAGCATTTGCCCAAAGCCCACATCCTGGCCTGTGCTCCATCCAACTCAGGG
GCTGACCTCCTCTGTCAGCGGCTCCGGGTCCACCTGCCCAGCTCCATCTACCGTCTCCTGGCCCCCAGCA
GGGACATCCGAATGGTGCCTGAGGACATTAAGACCTGCTGTAACTGGGATGCTAAGAAGGGAGAATATGT
GTATCCTGCTAAGAAGCACCTGCAGCAATATCGGGTCTTAATTACCACCCTCATCACTGCCAGCAGGTTG
GTGTCAGCCCAGTTTCCCATCGATCACTTCACACACATCTTCATCGATGAGGCTGGCCACTGCATGGAGC
CTGAGAGTCTGGTGGCCATAGCAGGACTGATGGATGTCAAGGAAACGGGCAATCCCGGAGGGCAGCTGGT
ACTGGCAGGAGACCCTCGGCAGCTGGGGCCTGTGCTGCGCTCGCCACTAGCCCTGAAGCATGGACTTGGC
TACTCTCTGCTAGAGCGCCTGCTCGCCTACAACTCCTTGTATAAGAAGGGCCCCAATGGCTATGACCCCC
AGTTCATCACCAAACTGCTCCGCAACTACAGGTCTCACCCCACCATCCTGGACATCCCTAACCAGCTGTA
CTACGACGGAGAGCTGCAGGCCTGCGCAGATGTGGTGGATCGAGAACGGTTCTGCCGCTGGGAGGGGCTG
CCTCAGCAGGGCTTCCCCATCATTTTCCATGGTGTAATGGGCAAAGATGAGAGAGAAGGCAATAGCCCAT
CCTTCTTCAACCCTGAAGAGGCTGCTACAGTGACGTCATACCTGAAACAACTCCTGGCCCCTTCCTCCAA
GAAGGGTAAAGCCCGCCTGAGCCCCCGAAATGTGGGCGTCATCTCCCCGTACCGGAAGCAGGTAGAAAAA
ATCCGTTACTGCATCACAAAACTTGACCGAGAACTTCGCGGACTGGATGACATCAAAGATTTGAAGGTGG
GCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAGCGTCATCCTCATCTCCACCGTCCGAAGCAGCCAGAG
CTTTGTACAGCTGGATCTAGACTTTAACCTCGGTTTCCTTAAGAACCCCAAGAGGTTCAATGTTGCTGTG
ACCCGAGCCAAGGCTTTGCTCATCGTAGTGGGCAACCCCCTCCTCCTAGGCCACGACCCAGACTGGAAAA
CGTTCCTGGAGTTCTGTAAAGAAAACGGGGGATATACCGGGTGCCCCTTTCCTGCCAAACTGGACCTGCA
GCAGGGACAGGACTTGCTCCAAGGTCTGAGCAAACTCAGCCCCTCTACCTCAGGGCCCCGCCGTCACCAG
AATCTCCCCCAGGAGCGGGAGGGTGAAGGGGGCCTGCCCTTACAAGTGGAGCCAGAGTGGAGAAATGAGC
TCTGA

Translation (1004 aa):
MPSKFSCRKLRETGQRFESFLAERGLDLETDRERLRTIYNHDFKPSYGTPAPGFSSMLYGMKIANLAFVT
KTRVRFFKLDRWADVQLPEKRRIKPGSNISKQHRSLLARIFHDRAEYLHGKHGVDVEVQGPHEARDGQLL
IHLDLNRKEVLTLRLRNGGSKPVTLTHLFPLCWTPQFVFYHGEQDLPCPLGPGESYELHIYCKTSIVGYF
PATVLWELLGPGESGAEGAETFYIARFLAAVAHSPLAAQLKPTTPFKRPPRLTRNSVLTNRIEEGERPDR
AKGYELELSLALGTYYPPILLRQLLPTLLQGPSIFTAPKEVAEIKAQLETTLKSRNYEVKLRLLLHLEEL
QMEHDIRHYDLDSVPMTWDPVDQNPRLLTLEVPGVAESRPSVLRGDHLFALLSSETQQDDPVTYKGFVHK
VELDRVKLSFSTSLLSRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWVLWPMLFPVASRGVSLLPSDVK
FKLYDRSLESNPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSG
ADLLCQRLRVHLPSSIYRLLAPSRDIRMVPEDIKTCCNWDAKKGEYVYPAKKHLQQYRVLITTLITASRL
VSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLG
YSLLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQACADVVDRERFCRWEGL
PQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYRKQVEK
IRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAV
TRAKALLIVVGNPLLLGHDPDWKTFLEFCKENGGYTGCPFPAKLDLQQGQDLLQGLSKLSPSTSGPRRHQ
NLPQEREGEGGLPLQVEPEWRNEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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