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Report for CCDS38485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38485.1 Public Mus musculus 3 Rusc1 23 108 98 CCDS HistoryNCBI Gene:72296Re-query CCDS DB by CCDS ID:38485.1Re-query CCDS DB by GeneID:72296See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052539.12 ENSMUSP00000056640.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052539.12Link to Ensembl Protein Viewer:ENSMUSP00000056640.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052539Re-query CCDS DB by Protein ID:ENSMUSP00000056640
Original member NCBI NM_001083807.1 NP_001077276.1 Updated not alive Link to Nucleotide Sequence:NM_001083807.1Link to Protein Sequence:NP_001077276.1Re-query CCDS DB by Nucleotide ID:NM_001083807Re-query CCDS DB by Protein ID:NP_001077276
Current member NCBI NM_001083807.2 NP_001077276.1 Accepted alive Link to Nucleotide Sequence:NM_001083807.2Link to Protein Sequence:NP_001077276.1Re-query CCDS DB by Nucleotide ID:NM_001083807Re-query CCDS DB by Protein ID:NP_001077276Link to BLAST:NP_001077276.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077276.1 893 Q8BG26-1 893 100% 0 0

Chromosomal Locations for CCDS 38485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89084482 89084650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89086773 89086895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89087719 89088268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89088800 89088846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89089000 89089105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89089177 89089351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89089485 89089561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89089669 89089767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89091138 89092473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2682 nt):
ATGCTGTCCCCTCAGCGGGCTTTACTCTGCAACCTCAATCACATCCATCTCCAGCATGTCTCCCTAGGCC
TGCACTTGTCCCGCCGTCCTGAACTACGAGAGGGGCCTCTGAGCACACCCCCGCCCCCGGGAGACACCGG
GGGCAAGGAAAGCAGGGGGCCCTGCAGCGGGACCCTTGTGGATGCCAACTCCAACAGTCCAGCTGTGCCC
TGTAGATGCTGCCAGGAGCACGGGTCCAGCATAGAAAATCAGCAGGACCCTTCCCAGGAGGAAGAGGCTG
TTTCCCCTTCAGATCCAGGATGCTCTTCCTCTCTCAGCTCCTGCTCAGACCTTAGCCCTGATGAGTCTCC
AGTGTCAGTCTACTCGCGAGACCTGCCTGGTAATGAGGATGCAAACCCTCAGCCTAGCACCTTGGAGCTG
GGCTCTCCTCTGGCTCCAGCGGGCCCTAGCACCTGCTCTCCAGACAGTTTCTGTTGCTCTCCTGATTCTT
GCTCTGGAATATCTTCTCCACCTGGACCTGACCTGGACTCGAACTGCAACGCCCTGACCACCTGCCAGGA
CCTACCTTCCCCAGGCTTGGAGGAAGAGGAAGACAGTGGGGAACAGGATCTTGCTACCTCTGAGCTCTCA
GAGACCGAAGATGGGAGAATCGACGCAGGGAAAGCAGAGCCCAGTTGGAAAATTAACCCCATTTGGAAAA
TTGACACAGAGAAAACTGAAGCTGGGTGGAAAACCATCGAGGACAGTGACTCTGGTCGGAAAACAGACGA
AAATACAAACTCGAGCTTAAAAACGGAATCTGGGAAATTGGCTTCTTGTTTGAACACCAATTCTGGTTCG
AAAATAGATGCAGGGAAAACTGATGGGGGATGGAGAGGTGACGTCAGCCAGGAGCCGGTGCCCCATCGGA
CAATCACGTCCTTCCATGAGCTGGCCCAGAAGCGCAAGCGGGGTCCAGGGCTGCCCCTTGTGCCGCAGGC
CAAGAAAGATCGCAGCGACTGGCTCATAGTCTTCTCGCCCGACACTGAGCTCCCGCCGACTGGGTCCTTG
GGAGGTTCTTTGGCACCTCCCCGAGAAGTCACCACCTTCAAGGAACTCCGGTCGAGAAGCCGAGCCCAGC
CTCCGCCAGTCCCGCCCCGGGACCCCCCGGCTGGGTGGGCTTTGGTCCCGCCTCGACCGCCTCCCCCACC
CGTCCCTCCGCGGAGGAAGAAAAATCGACTTGGGCTGCAGCCTATTGCAGAGGGGCTGTCGGAGGAGGGC
AGGGCGGCCAGCCCCCGGGCTGGTGAGGAGGCATCCGCCTCGCAGGAGCCGGAGGAACCGCGCGCGCACG
CCGTGGTGCGCAGTTCCTGGTCGTTTGCCGGTGTTCCCGGGGCTCAGCGGCTGTGGATGGCAGAAGCCCA
GAGTGGGACTGGCCAGCTGCAGGAGCAGAAGAAAGGTCTCCTGATAGCTGTCAGCGCTTCAGTGGACAAA
ATCATCTCGCATTTTGGGGCTGCTAGGAACTTGGTTCAGAAGGCTCAATTGGGGGATAGCCGACTGAGCC
CAGATGTGGGGCATCTGGTATTGACCACCCTCTGCCCGGCCCTCCATGCTTTGGTGGCTGATGGGCTGAA
GCCATTCCGGAAGGACCTCATCACTGGACAGCGGAGGAGCAGCCCTTGGAGTGTGGTGGAGGCATCTGTG
AAACCAGGTTCCTGCACACATTCGATGGGATCTCTGTACAGCCAGGTCAGCCGACTGGCCCCTCTGAGTA
GCAGCCGCAGCCGCTTCCACGCCTTCATCCTGGGCCTCCTCAACACCAAACAGTTGGAACTGTGGTTTTC
CAGCCTCCAGGAGGATGCAGGCCTACTGTCCCTCTTGTATCTGCCCACCGGATTCTTCTCCCTGGCTCGT
GGTAGCTGTCCATCCCTGGCTACAGAGCTGCTGCTTCTGCTGCAGCCACTGTCGGTGCTCACCTTCCACC
TGGACCTGCTCTTTGAGCACCACCACCACCTACCCGTGGGCCTGCAGCAGGCTCCTGCCCCTTCATGCCC
CCCTCCCGCCCTCCAGCAGACTATGCAGGCTGTGCTGCACTGGGGGGAACGTTTGGCTCAGAGTCTCCGA
GGGACTTCAGGGGAGAGCACTACAGACTCTTCAACCCCTTCAGCACGCCCTCCAGCAGGCAGTTGGTGGG
ATCAGCTGACCCAGGCTTCTCGGGTCTATGCCTCTGGAGGCACTGAGGGCTTCCCTCTTCTCCGGTGGGG
ACCCAGGCGTCATGGAACTACAGCTGAGGCGGCACAGGAGGCACCTCCGCCCACGGAACAAACCACACCA
GGCAGAAGCGTGTGGTTGGGGCGGCTATTTGGTGTGCCTGGGTGCCCCTCAGAAACTGAGAGTGGCGCCT
TCAAGTCTAGGAGACCATCCAGCTGGTTGCCCCCAACAGTAAGTGTGCTGGCTCTGGTGAAGAGGGGGAC
ACCTCCTGAGACTCCTCCTGAGGCGCTTGTGAGCTCACCAGGCAGCGTGGTGCAGGCTGACAGGGCAGTC
CGGGCTCTCTGTGACCACACTGCTGCAGGACCTGACCAATTGAGCTTCCAGCGTGGGGAATTGCTTCGAG
TCATTGCCACAGTGGATGAAGACTGGCTTCGCTGTGGGCGGGATGGTGTGGAGGGACTGGTGCCCGTGGG
ATACACTTCCCTTGTTCTGTAG

Translation (893 aa):
MLSPQRALLCNLNHIHLQHVSLGLHLSRRPELREGPLSTPPPPGDTGGKESRGPCSGTLVDANSNSPAVP
CRCCQEHGSSIENQQDPSQEEEAVSPSDPGCSSSLSSCSDLSPDESPVSVYSRDLPGNEDANPQPSTLEL
GSPLAPAGPSTCSPDSFCCSPDSCSGISSPPGPDLDSNCNALTTCQDLPSPGLEEEEDSGEQDLATSELS
ETEDGRIDAGKAEPSWKINPIWKIDTEKTEAGWKTIEDSDSGRKTDENTNSSLKTESGKLASCLNTNSGS
KIDAGKTDGGWRGDVSQEPVPHRTITSFHELAQKRKRGPGLPLVPQAKKDRSDWLIVFSPDTELPPTGSL
GGSLAPPREVTTFKELRSRSRAQPPPVPPRDPPAGWALVPPRPPPPPVPPRRKKNRLGLQPIAEGLSEEG
RAASPRAGEEASASQEPEEPRAHAVVRSSWSFAGVPGAQRLWMAEAQSGTGQLQEQKKGLLIAVSASVDK
IISHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSPWSVVEASV
KPGSCTHSMGSLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQEDAGLLSLLYLPTGFFSLAR
GSCPSLATELLLLLQPLSVLTFHLDLLFEHHHHLPVGLQQAPAPSCPPPALQQTMQAVLHWGERLAQSLR
GTSGESTTDSSTPSARPPAGSWWDQLTQASRVYASGGTEGFPLLRWGPRRHGTTAEAAQEAPPPTEQTTP
GRSVWLGRLFGVPGCPSETESGAFKSRRPSSWLPPTVSVLALVKRGTPPETPPEALVSSPGSVVQADRAV
RALCDHTAAGPDQLSFQRGELLRVIATVDEDWLRCGRDGVEGLVPVGYTSLVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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