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Report for CCDS38455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38455.1 Public Mus musculus 3 Fstl5 23 108 98 CCDS HistoryNCBI Gene:213262Re-query CCDS DB by CCDS ID:38455.1Re-query CCDS DB by GeneID:213262See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038364.14 ENSMUSP00000038506.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038364.14Link to Ensembl Protein Viewer:ENSMUSP00000038506.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038364Re-query CCDS DB by Protein ID:ENSMUSP00000038506
Original member Current member EBI ENSMUST00000160261.7 ENSMUSP00000125393.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160261.7Link to Ensembl Protein Viewer:ENSMUSP00000125393.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160261Re-query CCDS DB by Protein ID:ENSMUSP00000125393
Original member Current member NCBI NM_001253719.1 NP_001240648.1 Accepted alive Link to Nucleotide Sequence:NM_001253719.1Link to Protein Sequence:NP_001240648.1Re-query CCDS DB by Nucleotide ID:NM_001253719Re-query CCDS DB by Protein ID:NP_001240648Link to BLAST:NP_001240648.1
Original member Current member NCBI NM_178673.4 NP_848788.2 Accepted alive Link to Nucleotide Sequence:NM_178673.4Link to Protein Sequence:NP_848788.2Re-query CCDS DB by Nucleotide ID:NM_178673Re-query CCDS DB by Protein ID:NP_848788Link to BLAST:NP_848788.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240648.1 847 Q8BFR2 847 100% 0 0
NP_848788.2 847 Q8BFR2 847 100% 0 0

Chromosomal Locations for CCDS 38455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 76144965 76145090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76223841 76223874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76322054 76322302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76410438 76410634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76429742 76429862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76482225 76482391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76536244 76536364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76588947 76589108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76593443 76593577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76620480 76620506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76628913 76629031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76648276 76648425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76659659 76659766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76661758 76661882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 76707475 76708177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2544 nt):
ATGTTTAGGTGCTGGTCTGCCATTTTGATTCTTGGATTCATCTTTCTGGCATCTGAAGGGAGGCCAACAA
AAGAATCAGGATATGGCCTTAAATCCTATCAACCTCTTACAAGATTGCGACATAAGCAGGAAAAAAGTCA
AGAAAGTTCAAGAATCAAAGAATTTCTAATTCATGATGGACCATTTGGATCTTGTGAAAATAAGTACTGT
GGCTTGGGGAGGCACTGTGTTATCAACAGAGAGACAAGGCATGCGGAGTGTGCCTGCATGGACCTTTGTA
AACAGCACTACAAACCTGTGTGTGGATCTGATGGGGAATTCTATGAAAACCACTGTGAAGTGCACAGAGC
TGCCTGTCTTAAAAAGCAAAAGATCACCATCGTTCACAATGAAGACTGCTTCTTTGAAGGGGACAACTGC
ATGGCCATTGAATACAGCAAGATGAAAAGTATGCTTTTAGACTTACAAAATCAAAAGTATATTACACAAG
AAAATGAGAATCCCAACAGTGATGACATATCTAGGAAGAAGCCGTTGGTGGATCAAATGTTCAAGTATTT
TGATGCAGACAGTAATGGACTTGTAGATATTAATGAACTAACTCAGGTGATTAAACAGGAGGAATTGAAC
AAGGACCTTTCTGACTGTACTTTGTATGATCTGCTCAAGTATGATGACTTCAACGCTGACAAGCACCTGG
CTCTTGAAGAATTCTACAGAGCATTTCAGGTGATCCAGTTGAGTCTGCCTGAAGATCAGAGAGTAAGCAT
TACCGCAGCCACTGTGGGGCAGAGTGCTGTTCTGAGCTGTGCCATTGTGGGAACGCTGAGACCCCCTATC
ATATGGAAGAGGAACAACATTGTTCTAAATAATTTAGATTTGGAAGACATCAATGACTTTGGTGATGATG
GGTCCCTGTATATTACCAAGGTTACCACAGTTCACATGGGAAATTATACATGCTATGCAGATGGCTATGA
AAATGTCCGTCAGACACACATCTTCCAAGTGAATGTTCCTCCAGTTATCCGAGTGTATCCAGAGAGTCAG
GCCAGAGAACCTGGTGTAACTGCAAGCCTTAGGTGCCATGCCGAGGGCATTCCAGACCCTCAGCTTGGCT
GGCTGAAGAATGGGATTGACATTACACCGAAGCTCTCCAAACAGCTCACACTTCAAGCAAATGGCAGTGA
GGTCCACATAAGCAATGTCCGTTATGAAGATACAGGAGCATACACGTGCATTGCTAGGAATGAAGCCGGT
GTGGATGAAGACATCTCTTCTCTTTTTGTGGAAGATTCTGCTAGGAAGACACTAGCTAACATATTATGGA
GAGAAGAAGGTCTGGGAATTGGGAACATGTTCTATGTTTTTTATGAAGATGGAATCAAAGTGATACAACC
CACGGAATGTGAATTTCAGAGGCACATTAAGCCCAGTGAAAAGCTCCTTGGATATCAGGATGAAGTCTGT
CCCAAAGCAGAAGAGGATGAAGTGCAGAGATGTGTGTGGGCATCTGCTGTTAATGTCAAAGACAAGTTCA
TTTATGTCGCTCAGCCAACTTTGGACAGAATCTTGATTGTTGATGTGCAATCCCAAAAGGTTGTTCAGGC
AGTGAGTACAGATCCTGTACCAGTTAAATTACACTACGACAAGTCACATGACCAAGTCTGGGTGCTGAGC
TGGGGCAGCATGGAGAAGACATCACCAACTCTACAGGTGATCACTCTGGCCAGCGGGAATGTGCCACACC
ACACCATCCACACTCAGCCAGTTGGGAAACAGTTTGACAGAGTGGACGATTTTTTTATTCCAACTCCAAC
ACTTATTATTACTCACATGAGATTTGGGTTTATTCTTCATAAAGATGAATCTGCACTACACAAAATTGAT
CTCGAAACCATGTCCTACATCAAAACAATTAACCTGAAGGACTCACGATGCATTCCTCTATCCTTGGCAT
ACACCCATCTGGGAGGATACTACTTCATAAGCTGCAAGGCTGACATCACCGGAGCTACTCCACCACAGCT
CGTGGTAGACAGTGTGACTGACTCTATCATTGGCTTCAATAGCGATGTGACGGGCACTCCTTATGTCTCT
CCAGACGGACACTATCTTGTCAGTGTTAATGACGTGAAAGGTCTTGTCAGAGTCCAATATATCACCATCC
GAGGAGAGATTCTGGATGCTTTTGACATCCACACCAACCTACATATATCTGACCTGGCCTTCCAGCCATC
CTTCACAGAAGCCCACCAGTACAACATCTATGGCAGCTCAAGCCAACAAACAGATGTACTCTTTGTGGAG
CTTTCCTCTGGGAAGGTCAAGATGATCAAAAGCCTCAAAGAACCTCTCAAGACAGAAGACTGGCCCTGGA
GCCAGAAAAACAGGCACATCCAAGGCAGTGGCCTGTTTGGACAGTACCTGATGACACCTTCCAAAGATTC
TCTCTTCATCCTGGATGGTCGCCTTAATAAATTAAACTGTGAGATCACTGAGGTTCAGAAAGGAAATACA
GTTGTTTGGGTTGGCGATGCCTAA

Translation (847 aa):
MFRCWSAILILGFIFLASEGRPTKESGYGLKSYQPLTRLRHKQEKSQESSRIKEFLIHDGPFGSCENKYC
GLGRHCVINRETRHAECACMDLCKQHYKPVCGSDGEFYENHCEVHRAACLKKQKITIVHNEDCFFEGDNC
MAIEYSKMKSMLLDLQNQKYITQENENPNSDDISRKKPLVDQMFKYFDADSNGLVDINELTQVIKQEELN
KDLSDCTLYDLLKYDDFNADKHLALEEFYRAFQVIQLSLPEDQRVSITAATVGQSAVLSCAIVGTLRPPI
IWKRNNIVLNNLDLEDINDFGDDGSLYITKVTTVHMGNYTCYADGYENVRQTHIFQVNVPPVIRVYPESQ
AREPGVTASLRCHAEGIPDPQLGWLKNGIDITPKLSKQLTLQANGSEVHISNVRYEDTGAYTCIARNEAG
VDEDISSLFVEDSARKTLANILWREEGLGIGNMFYVFYEDGIKVIQPTECEFQRHIKPSEKLLGYQDEVC
PKAEEDEVQRCVWASAVNVKDKFIYVAQPTLDRILIVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVLS
WGSMEKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPTPTLIITHMRFGFILHKDESALHKID
LETMSYIKTINLKDSRCIPLSLAYTHLGGYYFISCKADITGATPPQLVVDSVTDSIIGFNSDVTGTPYVS
PDGHYLVSVNDVKGLVRVQYITIRGEILDAFDIHTNLHISDLAFQPSFTEAHQYNIYGSSSQQTDVLFVE
LSSGKVKMIKSLKEPLKTEDWPWSQKNRHIQGSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVQKGNT
VVWVGDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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