NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38320.1 Public Mus musculus 2 Wfdc15b 23 108 98 CCDS HistoryNCBI Gene:192201Re-query CCDS DB by CCDS ID:38320.1Re-query CCDS DB by GeneID:192201See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018355.10 ENSMUSP00000018355.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018355.10Link to Ensembl Protein Viewer:ENSMUSP00000018355.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000018355Re-query CCDS DB by Protein ID:ENSMUSP00000018355
Original member Current member EBI ENSMUST00000109376.8 ENSMUSP00000105001.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109376.8Link to Ensembl Protein Viewer:ENSMUSP00000105001.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109376Re-query CCDS DB by Protein ID:ENSMUSP00000105001
Original member Current member EBI ENSMUST00000164567.3 ENSMUSP00000132507.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164567.3Link to Ensembl Protein Viewer:ENSMUSP00000132507.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164567Re-query CCDS DB by Protein ID:ENSMUSP00000132507
Original member Current member NCBI NM_001045554.1 NP_001039019.1 Accepted alive Link to Nucleotide Sequence:NM_001045554.1Link to Protein Sequence:NP_001039019.1Re-query CCDS DB by Nucleotide ID:NM_001045554Re-query CCDS DB by Protein ID:NP_001039019Link to BLAST:NP_001039019.1
Original member Current member NCBI NM_138685.2 NP_619626.1 Accepted alive Link to Nucleotide Sequence:NM_138685.2Link to Protein Sequence:NP_619626.1Re-query CCDS DB by Nucleotide ID:NM_138685Re-query CCDS DB by Protein ID:NP_619626Link to BLAST:NP_619626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001039019.1 80 Q9JHY4 80 100% 0 0
NP_619626.1 80 Q9JHY4 80 100% 0 0

Chromosomal Locations for CCDS 38320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164215114 164215271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164215385 164215469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (243 nt):
ATGAAGCTGCTTGGCCTCTCTCTACTCGCAGTGACCATTCTGCTTTGCTGTAACATGGCTCGACCTGAAA
TAAAGAAGAAGAACGTTTTTTCCAAACCTGGCTATTGCCCAGAGTATCGGGTTCCCTGCCCCTTTGTCCT
TATACCTAAATGCAGGCGTGATAAAGGCTGCAAGGACGCCCTGAAGTGTTGCTTCTTCTACTGCCAGATG
CGCTGTGTGGATCCATGGGAGAGCCCAGAATAG

Translation (80 aa):
MKLLGLSLLAVTILLCCNMARPEIKKKNVFSKPGYCPEYRVPCPFVLIPKCRRDKGCKDALKCCFFYCQM
RCVDPWESPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH