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Report for CCDS37980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37980.1 Public Mus musculus 19 Sorbs1 23 108 98 CCDS HistoryNCBI Gene:20411Re-query CCDS DB by CCDS ID:37980.1Re-query CCDS DB by GeneID:20411See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099467.9 ENSMUSP00000097066.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099467.9Link to Ensembl Protein Viewer:ENSMUSP00000097066.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099467Re-query CCDS DB by Protein ID:ENSMUSP00000097066
Original member Current member EBI ENSMUST00000225153.1 ENSMUSP00000153313.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225153.1Link to Ensembl Protein Viewer:ENSMUSP00000153313.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225153Re-query CCDS DB by Protein ID:ENSMUSP00000153313
Original member Current member NCBI NM_178362.1 NP_848139.1 Accepted alive Link to Nucleotide Sequence:NM_178362.1Link to Protein Sequence:NP_848139.1Re-query CCDS DB by Nucleotide ID:NM_178362Re-query CCDS DB by Protein ID:NP_848139Link to BLAST:NP_848139.1

Chromosomal Locations for CCDS 37980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40295049 40295116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40296532 40296644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40299463 40299521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40311669 40311863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40314364 40314489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40314617 40314731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40318022 40318068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40324747 40324832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40327450 40327622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40336986 40337035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40340045 40340146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40340685 40340750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40344356 40344439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40349899 40350013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40352277 40352406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40352518 40352565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40361042 40361104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40361429 40361503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40363202 40363265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40364994 40365166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40369690 40369719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40373476 40373617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40376645 40377016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40382521 40382633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40393388 40393516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40398542 40398610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40402258 40402267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2817 nt):
ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGAC
CAGACAAAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTC
CTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAGAT
GAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCT
ATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGGTGCCACCTCCTCCAGCTCAGCCCCGTC
TGAGGTAATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGGGCAAGAAGGCACTGCCAGA
ACTCCAGCATCTCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCCCTGCTGCCTCACCTC
TGACCTTCCCGACACTCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCACAGCCAGCCAGC
CAGTGCTTGTGGCTCCCTCTCCCCTGCTAGCCAGACGTCACCACCCTCACCACCACCTCCGCTGGTCCCT
CCCGTCCCGGAGGACCTCCACAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCGGCAGTC
CTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACC
TTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGAGCAG
CAAAAGCGACTCAGTAGTCTTTCAGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAA
CCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGT
GAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGA
TCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAGACACTCCTGAGGAAAACC
CTTATTTCCCTACGTACAAATTCCCCGAGCTTCCAGAAATCCTGCAGAATTCTGAAGAGGACAGCTCTTA
CACTCCTACCTACCAGTTTCCTGCATCTACGCCTAGTCCTAAGTCAGAAGATGATGATTCTGATGTCCAT
TCCCCTCGATATTCCTTCTCTGACGACACAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGA
ACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACT
CAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCA
GAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATGAGTCGGG
ATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGG
GAGACCGCCTCCCAAAAAGATATGGGACTATACTCCTGGAGACTGCTCTATCCTTCCTAGAGAGGATAGA
AAGACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGA
CCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGCTCAGCAGTCAGCCCGACTCCAGACATTACGTC
AGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGG
GGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTC
AGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGATTCAGAGTCACCAAGACATTT
TATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAGATGAGA
CCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGAGCTGCCTCTGCAGAAGGGAGACGTTG
TTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACACCATGGCCGGGTGGGAATCTTCCC
ACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTT
TTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAA
AGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATC
TCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGAT
TACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGCAACCTCAAGCCC
AGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAG
TTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGT
GACGATGGATGGTTTGTTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAA
AACCTTTATATCTATAA

Translation (938 aa):
MSSECDVGSSKAVVNGLASGNHGPDKDMDPTKICTGKGTVTLRASSSYRGTPSSSPVSPQESPKHESKSD
EWKLSSSADTNGNAQPSPLAAKGYRSVHPSLSADKPQGATSSSSAPSEVIVVPLYLVNTDRGQGQEGTAR
TPASLGPLGCVHTVPATTPAASPLTFPTLDDFIPPHLQRRPHHSQPASACGSLSPASQTSPPSPPPPLVP
PVPEDLHRGLEPDLPGAVSSTGSPLLNEVSSSHIETDSQDFPPTSRPSSAYPSTTIVNPTIVLLQHNREQ
QKRLSSLSDPASERRAGEQDPVPTPAELTSPGRASERRAKDASRRVVRSTQDLSDVSTDEVGIPLRNTER
SKDWYKTMFKQIHKLNRDTPEENPYFPTYKFPELPEILQNSEEDSSYTPTYQFPASTPSPKSEDDDSDVH
SPRYSFSDDTKSPLSVPRSKSEMNYIEGEKVVKRSATLPLPARSSSLKSSPERNDWEPPDKKVDTRKYRA
EPKSIYEYQPGKSSVLTNEKMSRDISPEEIDLKNEPWYKFFSELEFGRPPPKKIWDYTPGDCSILPREDR
KTNLEKDLSFCQAELEADLEKVETVNKSPSANSPQSSAVSPTPDITSEPPGYIYSSNFHAVKRESDGTPG
GLASLENERQIYKSVLEGGDIPLQGLSGLKRPSSSASTKDSESPRHFIPADYLESTEEFIRRRHDDKEMR
PARAKFDFKAQTLKELPLQKGDVVYIYRQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPRKLAPVQV
LEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVLKRPLVKTPVD
YIDLPYSSSPSRSATVSPQQPQAQQRRVTPDRSQPSLDLCSYQALYSYVPQNDDELELRDGDIVDVMEKC
DDGWFVGTSRRTRQFGTFPGNYVKPLYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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