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Report for CCDS37407.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
37407.1 |
Public |
Mus musculus |
16 |
Ttc3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:22129](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:37407.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:22129](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 37407.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000117648.8 |
ENSMUSP00000112801.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000117648.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000112801.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000117648](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000112801](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000232395.1 |
ENSMUSP00000156023.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000232395.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000156023.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000232395](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000156023](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000232660.1 |
ENSMUSP00000156151.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000232660.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000156151.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000232660](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000156151](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_009441.2 |
NP_033467.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_009441.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_033467.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_009441](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_033467](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_033467.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_033467.2 |
1979 |
O88196-1 |
1979 |
99.8484% |
0 |
3 |
Chromosomal Locations for CCDS 37407.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5940 nt): ATGGATGACTTTGCTGAGGGAGGTCTCAGTTTGGCAGATGATATCTTACTGGAAGATTACCCTTATGAGG ATGACTGTATCTGTACTCCTGACTTTACCACTGACGATTATGTTCGAGTAACCCAGCTTTACTATGAAGG CGTGGGTATGCAATATAAAGATTATGCCCAAAGTGAGAAAAATTTAGAATATGACATCTGCAATATCTGG TGCAGTAAGCCACTCTCCATCCTGCAAGATTACTGTGATGCCATTAAGCTGTACATCTTCTGGCCACTTC TTTTTCAACATCAACACAGTTCTATAATATCAAGATTGCACCCCTGTGTAGAAGCCATCCGTTCTCGTGC TGCTGAGATAAGTTTGAAGAAATTACAACATCTTGAGTTGATGGAAGACATTGTGGATTTGGCAAAGAAA GTTGCAAATGATTCATTCCTTATTGAAGGCTTATTGAAAATTGGTTATAAAATAGAAAATAAAATCTTGG CAATGGAAGATGCTTTAAATTGGATAAAATACACGGGTGATGTAACAATTCTACCTAAATTAGGATCAGT TGACAATTGCTGGCCCATGCTAAGTATTTTCTTTACTGAATATAAGTACCATATTACTAGAGTTGTAACT GAAAATTGCAACTTGCTAGAAGAATTTAGAAGGCATAGTTGCATGCAGTGTGTGAAGCAAGGAGAACTCA TGAAAATGAGAGGAAATGAAGAGTTCTCAAAGGAAAAGTTTGAAATAGCTGTTATTTATTACACCAGAGC CATTGAATATAGACCTGAAAACCATCTTCTTTATGGTAACCGAGCTCTCTGTTTTCTTCGTATGGGGCAG TTTAGAAATGCACTTAGCGATGGAAAGAGGGCCATTGTTTTGAAGAACACCTGGCCAAAGGGTCATTATC GTTATTGTGATGCTCTTTGTATGCTGGGGGAATATGACTGGGCCCTGCAAGCAAACATAAAAGCTCAAAA ACTCTGTAAAAATGACCCTGAGGGAATCAAGGATCTAATTCAGCAGCATGTAAAGTTACAAAAACAAATA GAAGACCTACAAGGTCGGACATCAAATAAGAATCCAATTAAAGCTTTTTATGAAAGCAGGGCTTACATAC CTAGAAACTCATCAGCACCTGCTTTTAGGACATCACTTAACTTTGTGGAAACAGAAAGAGGTTTCAGAAA AACTAAGTACAAAATGGCAAATGGTGGCGATCAGAATCAAAAGGTGGCAGATGAGGCTTTGAAGGGGGAC GATTGTGACTGTCATCCTGAATTTCTGCCACCTCCAAGTCAGCCTCCAAGACACAAAGGAAAACAAAAAT CACGAAACAATGAATCAGAAAAGCCCAGTTCTAATTCAGAAGTGAGTTTACAAGTAGATTTGAAAAGCAT TTTGGAGAAACAGTTTTCAAAATCTTCCAGAGCTGCACACCAGGATTTTGCTAACATCATGAAAATGCTA AGGAGCTTGATTCAGGATGGGTACACGGCCCTGTTAGAGCAGCGCTGCCGCAGCGCTGCCCAGGCCTTTA CAGAGCTGCTCAATGGTTTAGACCCTCAGAAAATAAAGCAATTGAACCTGGCCATGATTAATTATGTATT AGTAGTCTATGGACTTGCCGTTTCTCTCCTTGGAATAGGACGACCAGAGGAGCTGTCTGAAGCCGAAAAC CAGTTTAAGAGGATTATCGAACACTATCCCAATGAGGGGCTGGACTGCTTGGCCTACTGCGGAATAGGAA AAGTGTATTTGAAAAAGAACAGATTTCTCGAAGCTCTTAATCACTTTGAAAAGGCAAAGACTTTAATTAG TCGTCTCCCTGGAATTCTAACTTGGCCCACAAGTAATGTGATTATTGAAGAATCTAAGCCAGAAAAAGTC AAGGTGATGTTAGAGAAGTTTGTTGAAGAATGCAAGTTTCCCCCAGTGCCAGATGCTGTTTGTTGCTATC AGAAGTGCCGTGGATATTCTAAAATTCAGATTTACTTAACTGATCCAGACTTTAAGGGTTTTATACGAAT TAGCTGTTGCCAATACTGTAAGGTAGAATTTCATATGAACTGCTGGAAAAAGTTAAAAACAACAACTTTT AATGATAAAATTGACAAGGATTTTCTACAAGGAATCTGTCTCACTCCCGATTGTGAGGGAATCATTTCTA AGATTATCATCTACAGCAGTGGAGGTCAAGTTAAATGTGAATTTGAACACAAGGTCATAAAAGAAAAGGT TCCTTCAAGACCTGTTCTGAAACAGAAATGTTCCAGCCTAGAGAAGTTAAGACTGAAAGAAGACAAAAAA TTGAAGAGAAAGATCCAAAAGCAAGAGGCAAAAAAGTTAGCACAAGAAAGAATGGAAGAGGACTTAAGAG AAAGCAATCCACCTAAAAATGAAGAGCCAGAAGAAACCTCAGACAGTGCTCAGCGTTGTCAGTTTCTTGA TGACAGAATCCTGCAGTGCATAAAGCAGAATGCTGACAAGATTAAATCTGTTGTATTGAATACATCCACG CTTCTCAAAGAGCTGCTCTCTTGGAAGGTTCTGAGCACGGAAGACTATACAACATGCTTTTCTAGCAAAA ATTTTGTCCATGAAGCAGTGGACTATGTTATCGGTCACTTGATCCAAGAGAAGAACAGAGTAAAGACACG GATATTTCTGCATGTTTTGAGTGAGCTTAAAGAGTTAGACCCCAAGTTGGCTCCCTGGATCCAGAGACTG AATAGTTTTGGCTTGGATGCCATAGGACCCTTTTTCACTCGGTACGGAGCATCTCTCAAGGAGCTTGATT TCCACGTCGTGACTGTCCTCTGGGATGAGAAGTACGGCCATAAACTGGGCTCTATAGAAGGAAAGCAGCT TGATTACTTCTTTGAGCCAGCATCGGCAATGGAAGCACGCTGTTTAATATGGCTTCTGGAAGAGCACAGG GACAAGTTTCCGGCCTTGCACAGTGCCTTAGACGAGTTCTTTGATATAATGGACAGCCGATGCACTGTAC TAAGGAAGCAAGACAGCGATGAAATGCCGTTTGGTTGTATCAAGGTAAAAAACAAAGGCAAGAAAAAGAA GCCAAAAGATTCAAAGCCAATGTTAGTGGGATCTGGAGCTGCATCAGTAGCACCGAGCAGTGAGGCTGTC ACTCCAGAAGACCATAGCAGGCGCAATTCAGATTCTGCAGGACCATTTGCAGTGCCTGACCACCTTCGGC AAGATGTGGAAGAATTTGAAGCTCTTTATGACCAGCACAGCAGCGAGTATGTTGTCCGAAATAAGAAGCT CTGGGATATTAACCCCAAACAGAAATGTTCGACTCTGTATGATTATTTCTCTCAGTTGTTGGAAGAGCAC GGCCCCTTGGATATGAGTGACAGGATGTTCTCTGAGGAATATGAGTTCTTCCCTGAAGAAACTCGACAGA TACTGGAGAAGGCAGGAGGGCTGAAGTCGTTCCTCCTGGGCTGTCCTCGATTTGTTGTGATCGACAACTG CATTGCATTGAAAAAAGTTGCCTCAAGACTCAAGAAAAAAAGAAAGAAGAAAAACATGAAAGCTAAAGTT GAAGACATTTCAAAAACAGGAGAATATTTACGAGTTAAACTACCACTAAATCCAACTGCTAGGGAATTTC AACCAGATGTAAAGTCTGAAGCACTGTCTGAGGATGTGAAGTCCATACCAGGACCTGCCGACTCCTCAAC CCTAGCTGCGGAGGATCTGAAGGCCCAGCTGGACTCTGATAGCTCTTCTGGGTCAGCTTCGGAGGACAGC AGACTGGAAGTGGCCTCTCCTGACTCTCCTACACCACTCTGTGAGGATGCTTCTCCTTCCCCCACGCCAG CTCCTGAAGAAGCCAAACCAACATACTGGGCTCAATCACACTTGGTCACAGGATTCTGCACATACCTTCC TTTTCAAGGATTTGGCATCACCCAGCGACCAGCGTACATTAACATGGTACCTAGCCTGTCGCAGTTCACT AGCATTTACACACCTTTGGCCAACATTTCTTCTGAGTATCCAATGCAAAGATCCATGCCAGTGGTGCCAT CTTTTGTAGCCAGCAACAGAGCAGATGAAAATGCCGCTGCATACTTTGAGAGTCCTAATCTGAATACTGA GCACGACTCTGGTGACCACATGGCCTCTGAAACACAGATCCTGGAGGATACTTTGGGAGTGTGTGTCAGG TCCCAGGGCAGCGCAGCTGATGCTGATCCAGCTCTGAGTGAGCCTGAGGGAAACAGCGAACACAGTGGGA GCTCTGACAGCCTGTGGGAAGCTTCTCTAGAAAATGTCAGTGGAACAACAGATGCTCCAGCTGCTCCATC GGTTGCCATACAGGTGTCTAGGAGCATGGTACATCAGGAAGTCAACACTGAGCCGTATGAGCCGTTTGAA ACACAGCAGGGGGACCTTTCCCAGAAGGAAAAGGAGTGCCACCTACTCAGAGAGCAGCTGAAGGTAGCAT GTGAGAACTGCGAGCAGATAGAACTCAGGAGCTCACAAGAGATCAAGGACCTGGAGGAAAAGCTGCAACG GCACACAGAGGAAAACAAGATCTCAAAGACGGAATTAGACTGGTTCCTCCAAGATTTGGACAGAGAGATT AAAAAGTGGCAACAAGAGAAAAAAGAAATCCAAGAAAGATTAAAAGCCCTGAAGAAAAAAATTAAAAAGG TTATCAATACCAGTGAAATGCCTGCCCAGAAAAATGATGGATTCGATAAGGAATGTGAACCACATCCGGA CCAGTCCCTTGGATTCAGCAGTGCACTCACAGATGAGAAGACAAAAGTAGAAGAGTCTGTCAGGAAAGGG AAAGAGCTCTATGAAGAGAGTCACCAGAGAGCCGTGGCTGCAGAGGTATCTGTTCTTGAAAACTGGAAAG AGCGAGAAGTGTGCAAACTACAGGGTGTGGCGTCACAATCAGAAGCCTATCTTAAAAGCCTCAAGCTGAT GAGCAGTGATTCTGCAACGTATCCCGATGTGGAGTATGATATACTTTCATGGGAGTCATTTCTTTCTACT GTAAGAGAAGAGATCGAGAGCAAAAAGTCTCAGTTTGAAGAGCATATTAAGGCCATTAAGAATGGTTCTC GACTCAGTGACCTTTCCAGTGTGCAGCTTTCTGAGGTTTCATTTCCTGGTTGTTCGACGATCCATCCTCA GTTCCTCTCTGAGTCTTCAGGCCATGAGGATCCCGGACTGGTGGCTTGTGTAGACAGCATGACTGGAGCA GTCCTCAATGATCCTTACATGGACTCTGCTAGTGGCTGCCCAGAGGAGGTTCCAGAACTGTCGCTGGGAT CACCCACCCATCAGCCAGAAGTTACTCAACAGCTTGAGCTCAAGGGGGCTAGCCAGGTGTCTCCATCAGA ACAGAGCCCTGAGGCCGACGAGAAACTATCTGGACAGGCTACTCGGTCAAGCCAGTCTCCAAAAAAGCCT TCCAACAGTATTATTGAACACCTGTCAGTGATATTCCCATGTTATACCAGCACTGAGCTTGCTGGGTTTA TTAAGAAAGTTAGAAACAAAACCAAGAACTCATTCTCGGGATTAACTATTGAGGAGATTGTGGAGAAAGT GACAGAACACATTGTCGATGAGCAAAAGAAGAAAAAGCCAAATCCAGGAAAAGACAAGAAGACATCTGAG GCTCATTCGGCTGCCTCTGTGGCCAAGTCCTCCCAGAGTCCACCCTTGGCAGCTGCTGGACCATCAGCTA GAACCAAAGGCCAGAAAAAAGATGATGTCCCTGCACCAGATGGAAATTCCTGTGAGATATGCCATGAAAT ATTCAAGTCAAAAAACATGCGTGTGCTAAAATGTGGGCACAAGTTTCACAAAGGGTGCTTTAAGCAGTGG CTGAAAGGGCAGAGCACGTGCCCCACCTGTGGCAGCAGTGACCTGCTGTCAGAAGAGTAA
Translation (1979 aa): MDDFAEGGLSLADDILLEDYPYEDDCICTPDFTTDDYVRVTQLYYEGVGMQYKDYAQSEKNLEYDICNIW CSKPLSILQDYCDAIKLYIFWPLLFQHQHSSIISRLHPCVEAIRSRAAEISLKKLQHLELMEDIVDLAKK VANDSFLIEGLLKIGYKIENKILAMEDALNWIKYTGDVTILPKLGSVDNCWPMLSIFFTEYKYHITRVVT ENCNLLEEFRRHSCMQCVKQGELMKMRGNEEFSKEKFEIAVIYYTRAIEYRPENHLLYGNRALCFLRMGQ FRNALSDGKRAIVLKNTWPKGHYRYCDALCMLGEYDWALQANIKAQKLCKNDPEGIKDLIQQHVKLQKQI EDLQGRTSNKNPIKAFYESRAYIPRNSSAPAFRTSLNFVETERGFRKTKYKMANGGDQNQKVADEALKGD DCDCHPEFLPPPSQPPRHKGKQKSRNNESEKPSSNSEVSLQVDLKSILEKQFSKSSRAAHQDFANIMKML RSLIQDGYTALLEQRCRSAAQAFTELLNGLDPQKIKQLNLAMINYVLVVYGLAVSLLGIGRPEELSEAEN QFKRIIEHYPNEGLDCLAYCGIGKVYLKKNRFLEALNHFEKAKTLISRLPGILTWPTSNVIIEESKPEKV KVMLEKFVEECKFPPVPDAVCCYQKCRGYSKIQIYLTDPDFKGFIRISCCQYCKVEFHMNCWKKLKTTTF NDKIDKDFLQGICLTPDCEGIISKIIIYSSGGQVKCEFEHKVIKEKVPSRPVLKQKCSSLEKLRLKEDKK LKRKIQKQEAKKLAQERMEEDLRESNPPKNEEPEETSDSAQRCQFLDDRILQCIKQNADKIKSVVLNTST LLKELLSWKVLSTEDYTTCFSSKNFVHEAVDYVIGHLIQEKNRVKTRIFLHVLSELKELDPKLAPWIQRL NSFGLDAIGPFFTRYGASLKELDFHVVTVLWDEKYGHKLGSIEGKQLDYFFEPASAMEARCLIWLLEEHR DKFPALHSALDEFFDIMDSRCTVLRKQDSDEMPFGCIKVKNKGKKKKPKDSKPMLVGSGAASVAPSSEAV TPEDHSRRNSDSAGPFAVPDHLRQDVEEFEALYDQHSSEYVVRNKKLWDINPKQKCSTLYDYFSQLLEEH GPLDMSDRMFSEEYEFFPEETRQILEKAGGLKSFLLGCPRFVVIDNCIALKKVASRLKKKRKKKNMKAKV EDISKTGEYLRVKLPLNPTAREFQPDVKSEALSEDVKSIPGPADSSTLAAEDLKAQLDSDSSSGSASEDS RLEVASPDSPTPLCEDASPSPTPAPEEAKPTYWAQSHLVTGFCTYLPFQGFGITQRPAYINMVPSLSQFT SIYTPLANISSEYPMQRSMPVVPSFVASNRADENAAAYFESPNLNTEHDSGDHMASETQILEDTLGVCVR SQGSAADADPALSEPEGNSEHSGSSDSLWEASLENVSGTTDAPAAPSVAIQVSRSMVHQEVNTEPYEPFE TQQGDLSQKEKECHLLREQLKVACENCEQIELRSSQEIKDLEEKLQRHTEENKISKTELDWFLQDLDREI KKWQQEKKEIQERLKALKKKIKKVINTSEMPAQKNDGFDKECEPHPDQSLGFSSALTDEKTKVEESVRKG KELYEESHQRAVAAEVSVLENWKEREVCKLQGVASQSEAYLKSLKLMSSDSATYPDVEYDILSWESFLST VREEIESKKSQFEEHIKAIKNGSRLSDLSSVQLSEVSFPGCSTIHPQFLSESSGHEDPGLVACVDSMTGA VLNDPYMDSASGCPEEVPELSLGSPTHQPEVTQQLELKGASQVSPSEQSPEADEKLSGQATRSSQSPKKP SNSIIEHLSVIFPCYTSTELAGFIKKVRNKTKNSFSGLTIEEIVEKVTEHIVDEQKKKKPNPGKDKKTSE AHSAASVAKSSQSPPLAAAGPSARTKGQKKDDVPAPDGNSCEICHEIFKSKNMRVLKCGHKFHKGCFKQW LKGQSTCPTCGSSDLLSEE
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